Analysis of interatomic Contacts of Structural Units in PDB entry:
6EJX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EJX entry

There are 2 chains in PDB entry 6EJX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 SER 2PRO 267
A
 SER 2PRO 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6EJX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
51 54Right-handed 310
Helix 2
AA2
D
212 214Right-handed 310
Helix 3
AA3
D
215 225Right-handed alpha
Helix 4
AA4
D
226 229Right-handed 310
Helix 5
AA5
D
237 241Right-handed 310
Helix 6
AA6
D
244 248Right-handed 310
Helix 7
AA7
D
257 261Right-handed 310
Helix 8
AA8
A
51 54Right-handed 310
Helix 9
AA9
A
212 214Right-handed 310
Helix 10
AB1
A
215 225Right-handed alpha
Helix 11
AB2
A
226 229Right-handed 310
Helix 12
AB3
A
237 241Right-handed 310
Helix 13
AB4
A
244 248Right-handed 310
Helix 14
AB5
A
257 261Right-handed 310
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There are 4 sheets in PDB entry 6EJX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 9first strand
Strand 2
D
15 18anti-parallel
Strand 3
D
35 39parallel
Strand 4
D
61 63parallel
Strand 5
D
83 85parallel
Strand 6
D
106 108parallel
Strand 7
D
130 132parallel
Strand 8
D
154 156parallel
Strand 9
D
178 180parallel
Strand 10
D
201 203parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 49first strand
Strand 2
D
71 73parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
15 18anti-parallel
Strand 3
A
35 39parallel
Strand 4
A
61 63parallel
Strand 5
A
83 85parallel
Strand 6
A
106 108parallel
Strand 7
A
130 132parallel
Strand 8
A
154 156parallel
Strand 9
A
178 180parallel
Strand 10
A
201 203parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
71 73parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il