Analysis of interatomic Contacts of Structural Units in PDB entry:
6EKT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EKT entry

There is 1 chain in PDB entry 6EKT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 15ALA 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6EKT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 50Right-handed alpha
Helix 2
AA2
A
151 169Right-handed alpha
Helix 3
AA3
A
170 173Right-handed 310
Helix 4
AA4
A
186 190Right-handed 310
Helix 5
AA5
A
228 233Right-handed 310
Helix 6
AA6
A
243 251Right-handed alpha
Helix 7
AA7
A
265 267Right-handed 310
Helix 8
AA8
A
373 395Right-handed alpha
Helix 9
AA9
A
402 410Right-handed alpha
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There are 7 sheets in PDB entry 6EKT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 199first strand
Strand 2
A
208 214anti-parallel
Strand 3
A
29 34anti-parallel
Strand 4
A
238 242anti-parallel
Strand 5
A
430 434anti-parallel
Strand 6
A
421 426anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
62 68anti-parallel
Strand 3
A
88 94anti-parallel
Strand 4
A
99 101anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
81 85anti-parallel
Strand 3
A
108 118anti-parallel
Strand 4
A
139 143anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
81 85anti-parallel
Strand 3
A
108 118anti-parallel
Strand 4
A
121 130anti-parallel
Strand 5
A
178 181anti-parallel
Strand 6
A
411 413anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
279 283anti-parallel
Strand 3
A
302 311anti-parallel
Strand 4
A
315 326anti-parallel
Strand 5
A
329 347anti-parallel
Strand 6
A
362 368anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 288first strand
Strand 2
A
302 311anti-parallel
Strand 3
A
315 326anti-parallel
Strand 4
A
329 347anti-parallel
Strand 5
A
352 355anti-parallel
Strand 6
A
397 398anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 294first strand
Strand 2
A
297 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il