Analysis of interatomic Contacts of Structural Units in PDB entry:
6EKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EKV entry

There is 1 chain in PDB entry 6EKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6LEU 741
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6EKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 17Right-handed alpha
Helix 2
AA2
A
131 149Right-handed alpha
Helix 3
AA3
A
149 159Right-handed alpha
Helix 4
AA4
A
183 194Right-handed alpha
Helix 5
AA5
A
313 332Right-handed alpha
Helix 6
AA6
A
333 335Right-handed 310
Helix 7
AA7
A
350 356Right-handed 310
Helix 8
AA8
A
403 409Right-handed alpha
Helix 9
AA9
A
418 425Right-handed alpha
Helix 10
AB1
A
425 433Right-handed alpha
Helix 11
AB2
A
541 565Right-handed alpha
Helix 12
AB3
A
571 585Right-handed alpha
Helix 13
AB4
A
598 610Right-handed alpha
Helix 14
AB5
A
612 632Right-handed alpha
Helix 15
AB6
A
641 651Right-handed alpha
Helix 16
AB7
A
654 669Right-handed alpha
Helix 17
AB8
A
670 675Right-handed alpha
Helix 18
AB9
A
682 696Right-handed alpha
Helix 19
AC1
A
703 713Right-handed alpha
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There are 10 sheets in PDB entry 6EKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
164 167anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 39first strand
Strand 2
A
45 62anti-parallel
Strand 3
A
65 80anti-parallel
Strand 4
A
85 89anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 39first strand
Strand 2
A
45 62anti-parallel
Strand 3
A
65 80anti-parallel
Strand 4
A
94 98anti-parallel
Strand 5
A
119 123anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
109 110anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 366first strand
Strand 2
A
381 388anti-parallel
Strand 3
A
177 182anti-parallel
Strand 4
A
412 417anti-parallel
Strand 5
A
734 740anti-parallel
Strand 6
A
725 731anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 206first strand
Strand 2
A
209 217anti-parallel
Strand 3
A
231 244anti-parallel
Strand 4
A
247 250anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
231 244anti-parallel
Strand 3
A
256 261anti-parallel
Strand 4
A
299 304anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 268first strand
Strand 2
A
282 288anti-parallel
Strand 3
A
340 344anti-parallel
Strand 4
A
715 716anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 444first strand
Strand 2
A
449 452anti-parallel
Strand 3
A
478 483anti-parallel
Strand 4
A
486 499anti-parallel
Strand 5
A
502 519anti-parallel
Strand 6
A
522 540anti-parallel
Strand 7
A
592 597anti-parallel
Strand 8
A
586 589anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 462first strand
Strand 2
A
468 473anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il