Analysis of interatomic Contacts of Structural Units in PDB entry:
6EMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EMV entry

There are 3 chains in PDB entry 6EMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 98GLN 272
B
 TRP 98GLN 272
C
 PRO 99GLN 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 6EMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
112 132Right-handed alpha
Helix 2
AA2
A
145 152Right-handed alpha
Helix 3
AA3
A
155 159Right-handed 310
Helix 4
AA4
A
165 172Right-handed alpha
Helix 5
AA5
A
190 194Right-handed 310
Helix 6
AA6
A
214 225Right-handed alpha
Helix 7
AA7
A
246 259Right-handed alpha
Helix 8
AA8
A
263 272Right-handed alpha
Helix 9
AA9
B
107 111Right-handed 310
Helix 10
AB1
B
112 132Right-handed alpha
Helix 11
AB2
B
145 152Right-handed alpha
Helix 12
AB3
B
165 173Right-handed alpha
Helix 13
AB4
B
190 194Right-handed 310
Helix 14
AB5
B
215 225Right-handed alpha
Helix 15
AB6
B
246 259Right-handed alpha
Helix 16
AB7
B
263 272Right-handed alpha
Helix 17
AB8
C
107 111Right-handed 310
Helix 18
AB9
C
112 132Right-handed alpha
Helix 19
AC1
C
145 152Right-handed alpha
Helix 20
AC2
C
165 172Right-handed alpha
Helix 21
AC3
C
190 194Right-handed 310
Helix 22
AC4
C
214 225Right-handed alpha
Helix 23
AC5
C
246 259Right-handed alpha
Helix 24
AC6
C
263 270Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6EMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
139 142parallel
Strand 3
A
100 104parallel
Strand 4
A
198 202parallel
Strand 5
A
177 181parallel
Strand 6
A
228 232parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
139 142parallel
Strand 3
B
100 104parallel
Strand 4
B
198 202parallel
Strand 5
B
177 181parallel
Strand 6
B
228 232parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 162first strand
Strand 2
C
139 142parallel
Strand 3
C
100 104parallel
Strand 4
C
198 202parallel
Strand 5
C
177 181parallel
Strand 6
C
228 232parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il