Analysis of interatomic Contacts of Structural Units in PDB entry:
6EMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EMY entry

There are 6 chains in PDB entry 6EMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 82ALA 397
B
 MET 82ALA 397
C
 T -19 T -1
E
 A -18 T -1
F
 A 0 A 24
D
 A 0 G 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6EMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 94Right-handed alpha
Helix 2
AA2
A
99 116Right-handed alpha
Helix 3
AA3
A
117 121Right-handed 310
Helix 4
AA4
A
122 126Right-handed 310
Helix 5
AA5
A
127 142Right-handed alpha
Helix 6
AA6
A
144 166Right-handed alpha
Helix 7
AA7
A
176 180Right-handed 310
Helix 8
AA8
A
192 206Right-handed alpha
Helix 9
AA9
A
209 211Right-handed 310
Helix 10
AB1
A
212 223Right-handed alpha
Helix 11
AB2
A
225 231Right-handed alpha
Helix 12
AB3
A
233 237Right-handed 310
Helix 13
AB4
A
275 287Right-handed alpha
Helix 14
AB5
A
314 333Right-handed alpha
Helix 15
AB6
A
342 357Right-handed alpha
Helix 16
AB7
A
360 369Right-handed alpha
Helix 17
AB8
A
372 378Right-handed alpha
Helix 18
AB9
A
384 396Right-handed alpha
Helix 19
AC1
B
88 94Right-handed alpha
Helix 20
AC2
B
99 116Right-handed alpha
Helix 21
AC3
B
116 121Right-handed alpha
Helix 22
AC4
B
127 142Right-handed alpha
Helix 23
AC5
B
144 165Right-handed alpha
Helix 24
AC6
B
176 181Right-handed alpha
Helix 25
AC7
B
194 205Right-handed alpha
Helix 26
AC8
B
209 211Right-handed 310
Helix 27
AC9
B
212 220Right-handed alpha
Helix 28
AD1
B
225 231Right-handed alpha
Helix 29
AD2
B
233 235Right-handed 310
Helix 30
AD3
B
275 289Right-handed alpha
Helix 31
AD4
B
314 333Right-handed alpha
Helix 32
AD5
B
342 356Right-handed alpha
Helix 33
AD6
B
360 369Right-handed alpha
Helix 34
AD7
B
372 378Right-handed alpha
Helix 35
AD8
B
384 397Right-handed alpha
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There are 5 sheets in PDB entry 6EMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 246first strand
Strand 2
A
270 273anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 253first strand
Strand 2
A
257 261anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
300 301anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 238first strand
Strand 2
B
243 246anti-parallel
Strand 3
B
270 273anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 253first strand
Strand 2
B
257 261anti-parallel
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