Analysis of interatomic Contacts of Structural Units in PDB entry:
6EOD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EOD entry

There are 8 chains in PDB entry 6EOD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	ARG 294
B	THR 6	ARG 294
C	THR 7	ARG 294
D	THR 6	ASN 295
F	THR 7	PHE 293
G	THR 11	ARG 294
E	THR 6	ALA 296
H	THR 6	ASN 295

There are100 helices in PDB entry 6EOD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	29	Right-handed alpha
Helix 2	AA2	A	39	42	Right-handed 310
Helix 3	AA3	A	43	49	Right-handed alpha
Helix 4	AA4	A	56	64	Right-handed alpha
Helix 5	AA5	A	73	83	Right-handed alpha
Helix 6	AA6	A	100	114	Right-handed alpha
Helix 7	AA7	A	126	130	Right-handed 310
Helix 8	AA8	A	148	159	Right-handed alpha
Helix 9	AA9	A	169	198	Right-handed alpha
Helix 10	AB1	A	204	233	Right-handed alpha
Helix 11	AB2	A	241	259	Right-handed alpha
Helix 12	AB3	A	266	279	Right-handed alpha
Helix 13	AB4	A	285	294	Right-handed 310
Helix 14	AB5	B	16	29	Right-handed alpha
Helix 15	AB6	B	39	42	Right-handed 310
Helix 16	AB7	B	43	49	Right-handed alpha
Helix 17	AB8	B	56	64	Right-handed alpha
Helix 18	AB9	B	73	83	Right-handed alpha
Helix 19	AC1	B	100	114	Right-handed alpha
Helix 20	AC2	B	126	130	Right-handed 310
Helix 21	AC3	B	149	159	Right-handed alpha
Helix 22	AC4	B	169	198	Right-handed alpha
Helix 23	AC5	B	204	233	Right-handed alpha
Helix 24	AC6	B	241	259	Right-handed alpha
Helix 25	AC7	B	266	279	Right-handed alpha
Helix 26	AC8	B	285	294	Right-handed 310
Helix 27	AC9	C	16	29	Right-handed alpha
Helix 28	AD1	C	39	42	Right-handed 310
Helix 29	AD2	C	43	49	Right-handed alpha
Helix 30	AD3	C	56	64	Right-handed alpha
Helix 31	AD4	C	73	83	Right-handed alpha
Helix 32	AD5	C	100	114	Right-handed alpha
Helix 33	AD6	C	126	130	Right-handed 310
Helix 34	AD7	C	149	159	Right-handed alpha
Helix 35	AD8	C	169	198	Right-handed alpha
Helix 36	AD9	C	205	233	Right-handed alpha
Helix 37	AE1	C	241	259	Right-handed alpha
Helix 38	AE2	C	266	279	Right-handed alpha
Helix 39	AE3	C	285	294	Right-handed 310
Helix 40	AE4	D	16	29	Right-handed alpha
Helix 41	AE5	D	39	42	Right-handed 310
Helix 42	AE6	D	43	49	Right-handed alpha
Helix 43	AE7	D	56	64	Right-handed alpha
Helix 44	AE8	D	73	83	Right-handed alpha
Helix 45	AE9	D	100	114	Right-handed alpha
Helix 46	AF1	D	126	130	Right-handed 310
Helix 47	AF2	D	151	159	Right-handed alpha
Helix 48	AF3	D	169	198	Right-handed alpha
Helix 49	AF4	D	205	233	Right-handed alpha
Helix 50	AF5	D	241	259	Right-handed alpha
Helix 51	AF6	D	266	279	Right-handed alpha
Helix 52	AF7	D	285	294	Right-handed 310
Helix 53	AF8	F	16	21	Right-handed alpha
Helix 54	AF9	F	24	29	Right-handed alpha
Helix 55	AG1	F	43	49	Right-handed alpha
Helix 56	AG2	F	56	64	Right-handed alpha
Helix 57	AG3	F	73	83	Right-handed alpha
Helix 58	AG4	F	100	114	Right-handed alpha
Helix 59	AG5	F	170	198	Right-handed alpha
Helix 60	AG6	F	204	233	Right-handed alpha
Helix 61	AG7	F	241	259	Right-handed alpha
Helix 62	AG8	F	266	279	Right-handed alpha
Helix 63	AG9	F	285	293	Right-handed 310
Helix 64	AH1	G	16	29	Right-handed alpha
Helix 65	AH2	G	56	64	Right-handed alpha
Helix 66	AH3	G	73	82	Right-handed alpha
Helix 67	AH4	G	100	114	Right-handed alpha
Helix 68	AH5	G	126	130	Right-handed 310
Helix 69	AH6	G	154	159	Right-handed alpha
Helix 70	AH7	G	169	198	Right-handed alpha
Helix 71	AH8	G	204	233	Right-handed alpha
Helix 72	AH9	G	241	259	Right-handed alpha
Helix 73	AI1	G	266	279	Right-handed alpha
Helix 74	AI2	G	285	294	Right-handed 310
Helix 75	AI3	E	16	29	Right-handed alpha
Helix 76	AI4	E	39	42	Right-handed 310
Helix 77	AI5	E	43	49	Right-handed alpha
Helix 78	AI6	E	56	64	Right-handed alpha
Helix 79	AI7	E	73	83	Right-handed alpha
Helix 80	AI8	E	100	114	Right-handed alpha
Helix 81	AI9	E	126	130	Right-handed 310
Helix 82	AJ1	E	151	159	Right-handed alpha
Helix 83	AJ2	E	169	198	Right-handed alpha
Helix 84	AJ3	E	204	233	Right-handed alpha
Helix 85	AJ4	E	241	259	Right-handed alpha
Helix 86	AJ5	E	266	279	Right-handed alpha
Helix 87	AJ6	E	285	293	Right-handed 310
Helix 88	AJ7	H	16	29	Right-handed alpha
Helix 89	AJ8	H	39	42	Right-handed 310
Helix 90	AJ9	H	43	49	Right-handed alpha
Helix 91	AK1	H	56	64	Right-handed alpha
Helix 92	AK2	H	73	83	Right-handed alpha
Helix 93	AK3	H	100	114	Right-handed alpha
Helix 94	AK4	H	126	130	Right-handed 310
Helix 95	AK5	H	152	160	Right-handed alpha
Helix 96	AK6	H	169	198	Right-handed alpha
Helix 97	AK7	H	204	233	Right-handed alpha
Helix 98	AK8	H	241	259	Right-handed alpha
Helix 99	AK9	H	266	279	Right-handed alpha
Helix 100	AL1	H	285	293	Right-handed 310

There are 8 sheets in PDB entry 6EOD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	33	36	parallel
Strand 3	A	10	13	parallel
Strand 4	A	66	69	parallel
Strand 5	A	92	95	parallel
Strand 6	A	117	124	parallel
Strand 7	A	136	141	anti-parallel
Strand 8	A	160	163	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	33	36	parallel
Strand 3	B	10	13	parallel
Strand 4	B	66	69	parallel
Strand 5	B	92	95	parallel
Strand 6	B	117	124	parallel
Strand 7	B	136	141	anti-parallel
Strand 8	B	160	163	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	33	36	parallel
Strand 3	C	10	13	parallel
Strand 4	C	66	69	parallel
Strand 5	C	92	95	parallel
Strand 6	C	117	124	parallel
Strand 7	C	136	141	anti-parallel
Strand 8	C	160	163	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	34	36	parallel
Strand 3	D	10	13	parallel
Strand 4	D	66	69	parallel
Strand 5	D	92	95	parallel
Strand 6	D	117	124	parallel
Strand 7	D	136	141	anti-parallel
Strand 8	D	160	163	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	53	first strand
Strand 2	F	33	36	parallel
Strand 3	F	10	13	parallel
Strand 4	F	66	69	parallel
Strand 5	F	92	95	parallel
Strand 6	F	117	124	parallel
Strand 7	F	136	140	anti-parallel
Strand 8	F	161	164	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	53	first strand
Strand 2	G	34	36	parallel
Strand 3	G	12	13	parallel
Strand 4	G	66	69	parallel
Strand 5	G	92	95	parallel
Strand 6	G	117	124	parallel
Strand 7	G	136	140	anti-parallel
Strand 8	G	160	163	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	33	36	parallel
Strand 3	E	10	13	parallel
Strand 4	E	66	69	parallel
Strand 5	E	92	95	parallel
Strand 6	E	117	124	parallel
Strand 7	E	136	140	anti-parallel
Strand 8	E	160	163	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	53	first strand
Strand 2	H	33	36	parallel
Strand 3	H	10	13	parallel
Strand 4	H	66	69	parallel
Strand 5	H	92	95	parallel
Strand 6	H	117	124	parallel
Strand 7	H	136	140	anti-parallel
Strand 8	H	161	164	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EOD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EOD