Analysis of interatomic Contacts of Structural Units in PDB entry:
6EOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EOI entry

There are 2 chains in PDB entry 6EOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6ARG 294
B
 THR 6ARG 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6EOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
39 42Right-handed 310
Helix 3
AA3
A
43 49Right-handed alpha
Helix 4
AA4
A
56 64Right-handed alpha
Helix 5
AA5
A
73 83Right-handed alpha
Helix 6
AA6
A
100 113Right-handed alpha
Helix 7
AA7
A
126 130Right-handed 310
Helix 8
AA8
A
148 159Right-handed alpha
Helix 9
AA9
A
169 198Right-handed alpha
Helix 10
AB1
A
205 221Right-handed alpha
Helix 11
AB2
A
222 233Right-handed alpha
Helix 12
AB3
A
241 260Right-handed alpha
Helix 13
AB4
A
266 279Right-handed alpha
Helix 14
AB5
A
285 293Right-handed 310
Helix 15
AB6
B
16 29Right-handed alpha
Helix 16
AB7
B
39 42Right-handed 310
Helix 17
AB8
B
43 49Right-handed alpha
Helix 18
AB9
B
56 64Right-handed alpha
Helix 19
AC1
B
73 83Right-handed alpha
Helix 20
AC2
B
100 114Right-handed alpha
Helix 21
AC3
B
126 130Right-handed 310
Helix 22
AC4
B
148 159Right-handed alpha
Helix 23
AC5
B
169 198Right-handed alpha
Helix 24
AC6
B
204 221Right-handed alpha
Helix 25
AC7
B
222 233Right-handed alpha
Helix 26
AC8
B
241 260Right-handed alpha
Helix 27
AC9
B
266 279Right-handed alpha
Helix 28
AD1
B
285 294Right-handed 310
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There are 2 sheets in PDB entry 6EOI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
34 36parallel
Strand 3
A
10 13parallel
Strand 4
A
66 69parallel
Strand 5
A
92 95parallel
Strand 6
A
117 124parallel
Strand 7
A
136 141anti-parallel
Strand 8
A
160 163parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
34 36parallel
Strand 3
B
10 13parallel
Strand 4
B
66 69parallel
Strand 5
B
92 95parallel
Strand 6
B
117 124parallel
Strand 7
B
136 141anti-parallel
Strand 8
B
160 163parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il