Analysis of interatomic Contacts of Structural Units in PDB entry:
6EOJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EOJ entry

There are 3 chains in PDB entry 6EOJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 1357
B	PRO 1	GLU 94
D	VAL 27	UNK 470

There are 18 helices in PDB entry 6EOJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	105	111	Right-handed alpha
Helix 2	AA2	A	203	207	Right-handed alpha
Helix 3	AA3	A	697	702	Right-handed alpha
Helix 4	AA4	A	841	846	Right-handed alpha
Helix 5	AA5	A	1203	1207	Right-handed 310
Helix 6	AA6	A	1262	1280	Right-handed alpha
Helix 7	AA7	A	1287	1292	Right-handed alpha
Helix 8	AA8	A	1310	1319	Right-handed alpha
Helix 9	AA9	A	1320	1327	Right-handed alpha
Helix 10	AB1	A	1335	1348	Right-handed alpha
Helix 11	AB2	A	1349	1355	Right-handed 310
Helix 12	AB3	B	17	22	Right-handed alpha
Helix 13	AB4	B	48	52	Right-handed 310
Helix 14	AB5	B	67	72	Right-handed alpha
Helix 15	AB6	D	35	46	Right-handed alpha
Helix 16	AB7	D	58	65	Right-handed 310
Helix 17	AB8	D	67	71	Right-handed 310
Helix 18	AB9	D	75	79	Right-handed 310

There are 29 sheets in PDB entry 6EOJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	18	first strand
Strand 2	A	29	32	anti-parallel
Strand 3	A	36	43	anti-parallel
Strand 4	A	47	56	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	66	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	84	91	anti-parallel
Strand 4	A	97	105	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	126	first strand
Strand 2	A	130	136	anti-parallel
Strand 3	A	139	145	anti-parallel
Strand 4	A	196	201	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	219	first strand
Strand 2	A	226	232	anti-parallel
Strand 3	A	248	258	anti-parallel
Strand 4	A	265	277	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	287	first strand
Strand 2	A	290	295	anti-parallel
Strand 3	A	298	303	anti-parallel
Strand 4	A	310	315	anti-parallel
Strand 5	A	327	332	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	347	first strand
Strand 2	A	360	367	anti-parallel
Strand 3	A	371	378	anti-parallel
Strand 4	A	385	392	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	410	first strand
Strand 2	A	420	425	anti-parallel
Strand 3	A	431	436	anti-parallel
Strand 4	A	499	505	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	517	first strand
Strand 2	A	538	544	anti-parallel
Strand 3	A	550	554	anti-parallel
Strand 4	A	929	933	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	567	first strand
Strand 2	A	909	913	anti-parallel
Strand 3	A	901	906	anti-parallel
Strand 4	A	892	897	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	590	first strand
Strand 2	A	595	600	anti-parallel
Strand 3	A	604	606	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	626	first strand
Strand 2	A	629	635	anti-parallel
Strand 3	A	638	643	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	664	first strand
Strand 2	A	667	672	anti-parallel
Strand 3	A	675	682	anti-parallel
Strand 4	A	689	692	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	704	712	first strand
Strand 2	A	740	744	anti-parallel
Strand 3	A	752	756	anti-parallel
Strand 4	A	765	768	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	791	first strand
Strand 2	A	796	803	anti-parallel
Strand 3	A	806	813	anti-parallel
Strand 4	A	819	823	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	855	first strand
Strand 2	A	861	867	anti-parallel
Strand 3	A	870	875	anti-parallel
Strand 4	A	881	885	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	943	950	first strand
Strand 2	A	955	965	anti-parallel
Strand 3	A	987	997	anti-parallel
Strand 4	A	1001	1009	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1013	1021	first strand
Strand 2	A	1033	1042	anti-parallel
Strand 3	A	1051	1059	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1087	1093	first strand
Strand 2	A	1104	1111	anti-parallel
Strand 3	A	1115	1123	anti-parallel

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There are 1 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1128	1134	first strand

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1172	1179	first strand
Strand 2	A	1183	1189	anti-parallel
Strand 3	A	1192	1199	anti-parallel
Strand 4	A	1212	1220	anti-parallel

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There are 1 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1224	1232	first strand

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	88	first strand
Strand 2	D	364	369	anti-parallel
Strand 3	D	355	358	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	101	first strand
Strand 2	D	107	112	anti-parallel
Strand 3	D	117	121	anti-parallel
Strand 4	D	127	131	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	144	first strand
Strand 2	D	148	154	anti-parallel
Strand 3	D	158	163	anti-parallel
Strand 4	D	169	175	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	186	first strand
Strand 2	D	191	196	anti-parallel
Strand 3	D	200	205	anti-parallel
Strand 4	D	211	216	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	227	first strand
Strand 2	D	233	237	anti-parallel
Strand 3	D	242	247	anti-parallel
Strand 4	D	253	258	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	269	first strand
Strand 2	D	276	281	anti-parallel
Strand 3	D	285	290	anti-parallel
Strand 4	D	296	302	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	309	312	first strand
Strand 2	D	319	323	anti-parallel

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There are 1 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	332	first strand

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EOJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EOJ