Analysis of interatomic Contacts of Structural Units in PDB entry:
6EPY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EPY entry

There are 2 chains in PDB entry 6EPY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 8	ILE 676
B	ALA 8	THR 604

There are123 helices in PDB entry 6EPY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	33	Right-handed 310
Helix 2	AA2	A	46	53	Right-handed alpha
Helix 3	AA3	A	61	66	Right-handed alpha
Helix 4	AA4	A	75	78	Right-handed 310
Helix 5	AA5	A	101	105	Right-handed 310
Helix 6	AA6	A	112	118	Right-handed alpha
Helix 7	AA7	A	124	130	Right-handed 310
Helix 8	AA8	A	171	182	Right-handed alpha
Helix 9	AA9	A	196	201	Right-handed 310
Helix 10	AB1	A	225	230	Right-handed alpha
Helix 11	AB2	A	239	244	Right-handed alpha
Helix 12	AB3	A	245	251	Right-handed 310
Helix 13	AB4	A	254	261	Right-handed alpha
Helix 14	AB5	A	316	327	Right-handed alpha
Helix 15	AB6	A	336	338	Right-handed 310
Helix 16	AB7	A	339	348	Right-handed alpha
Helix 17	AB8	A	380	392	Right-handed alpha
Helix 18	AB9	A	392	402	Right-handed alpha
Helix 19	AC1	A	404	413	Right-handed alpha
Helix 20	AC2	A	433	437	Right-handed 310
Helix 21	AC3	A	443	454	Right-handed alpha
Helix 22	AC4	A	471	475	Right-handed 310
Helix 23	AC5	A	487	505	Right-handed alpha
Helix 24	AC6	A	514	524	Right-handed alpha
Helix 25	AC7	A	535	541	Right-handed alpha
Helix 26	AC8	A	544	549	Right-handed 310
Helix 27	AC9	A	570	585	Right-handed alpha
Helix 28	AD1	A	588	607	Right-handed alpha
Helix 29	AD2	A	639	644	Right-handed alpha
Helix 30	AD3	A	645	649	Right-handed 310
Helix 31	AD4	A	653	656	Right-handed 310
Helix 32	AD5	B	30	33	Right-handed 310
Helix 33	AD6	B	46	53	Right-handed alpha
Helix 34	AD7	B	61	66	Right-handed alpha
Helix 35	AD8	B	75	78	Right-handed 310
Helix 36	AD9	B	101	105	Right-handed 310
Helix 37	AE1	B	112	118	Right-handed alpha
Helix 38	AE2	B	124	130	Right-handed 310
Helix 39	AE3	B	171	182	Right-handed alpha
Helix 40	AE4	B	196	201	Right-handed 310
Helix 41	AE5	B	225	230	Right-handed alpha
Helix 42	AE6	B	239	244	Right-handed alpha
Helix 43	AE7	B	245	251	Right-handed 310
Helix 44	AE8	B	254	261	Right-handed alpha
Helix 45	AE9	B	316	327	Right-handed alpha
Helix 46	AF1	B	336	338	Right-handed 310
Helix 47	AF2	B	339	348	Right-handed alpha
Helix 48	AF3	B	380	391	Right-handed alpha
Helix 49	AF4	B	392	402	Right-handed alpha
Helix 50	AF5	B	404	413	Right-handed alpha
Helix 51	AF6	B	433	437	Right-handed 310
Helix 52	AF7	B	443	454	Right-handed alpha
Helix 53	AF8	B	471	475	Right-handed 310
Helix 54	AF9	B	487	505	Right-handed alpha
Helix 55	AG1	B	514	524	Right-handed alpha
Helix 56	AG2	B	535	541	Right-handed alpha
Helix 57	AG3	B	544	549	Right-handed 310
Helix 58	AG4	B	570	585	Right-handed alpha
Helix 59	AG5	B	588	607	Right-handed alpha
Helix 60	AG6	B	639	644	Right-handed alpha
Helix 61	AG7	B	645	649	Right-handed 310
Helix 62	AG8	B	653	656	Right-handed 310
Helix 63	AG9	C	30	33	Right-handed 310
Helix 64	AH1	C	46	53	Right-handed alpha
Helix 65	AH2	C	61	66	Right-handed alpha
Helix 66	AH3	C	75	78	Right-handed 310
Helix 67	AH4	C	101	105	Right-handed 310
Helix 68	AH5	C	112	118	Right-handed alpha
Helix 69	AH6	C	124	130	Right-handed 310
Helix 70	AH7	C	171	182	Right-handed alpha
Helix 71	AH8	C	196	201	Right-handed 310
Helix 72	AH9	C	225	230	Right-handed alpha
Helix 73	AI1	C	239	244	Right-handed alpha
Helix 74	AI2	C	245	251	Right-handed 310
Helix 75	AI3	C	254	260	Right-handed alpha
Helix 76	AI4	C	316	327	Right-handed alpha
Helix 77	AI5	C	336	338	Right-handed 310
Helix 78	AI6	C	339	348	Right-handed alpha
Helix 79	AI7	C	380	391	Right-handed alpha
Helix 80	AI8	C	392	402	Right-handed alpha
Helix 81	AI9	C	404	413	Right-handed alpha
Helix 82	AJ1	C	433	437	Right-handed 310
Helix 83	AJ2	C	443	454	Right-handed alpha
Helix 84	AJ3	C	471	475	Right-handed 310
Helix 85	AJ4	C	487	505	Right-handed alpha
Helix 86	AJ5	C	514	524	Right-handed alpha
Helix 87	AJ6	C	535	541	Right-handed alpha
Helix 88	AJ7	C	544	549	Right-handed 310
Helix 89	AJ8	C	570	585	Right-handed alpha
Helix 90	AJ9	C	588	607	Right-handed alpha
Helix 91	AK1	C	639	644	Right-handed alpha
Helix 92	AK2	C	645	649	Right-handed 310
Helix 93	AK3	C	653	656	Right-handed 310
Helix 94	AK4	D	30	33	Right-handed 310
Helix 95	AK5	D	46	53	Right-handed alpha
Helix 96	AK6	D	75	78	Right-handed 310
Helix 97	AK7	D	101	105	Right-handed 310
Helix 98	AK8	D	112	118	Right-handed alpha
Helix 99	AK9	D	124	130	Right-handed 310
Helix 100	AL1	D	171	182	Right-handed alpha
Helix 101	AL2	D	196	201	Right-handed 310
Helix 102	AL3	D	225	230	Right-handed alpha
Helix 103	AL4	D	239	244	Right-handed alpha
Helix 104	AL5	D	245	247	Right-handed 310
Helix 105	AL6	D	254	261	Right-handed alpha
Helix 106	AL7	D	316	327	Right-handed alpha
Helix 107	AL8	D	336	338	Right-handed 310
Helix 108	AL9	D	339	348	Right-handed alpha
Helix 109	AM1	D	380	392	Right-handed alpha
Helix 110	AM2	D	392	402	Right-handed alpha
Helix 111	AM3	D	404	413	Right-handed alpha
Helix 112	AM4	D	433	437	Right-handed 310
Helix 113	AM5	D	443	454	Right-handed alpha
Helix 114	AM6	D	471	475	Right-handed 310
Helix 115	AM7	D	487	505	Right-handed alpha
Helix 116	AM8	D	514	524	Right-handed alpha
Helix 117	AM9	D	535	541	Right-handed alpha
Helix 118	AN1	D	544	549	Right-handed 310
Helix 119	AN2	D	570	585	Right-handed alpha
Helix 120	AN3	D	588	607	Right-handed alpha
Helix 121	AN4	D	639	644	Right-handed alpha
Helix 122	AN5	D	645	649	Right-handed 310
Helix 123	AN6	D	653	656	Right-handed 310

There are 28 sheets in PDB entry 6EPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	71	73	anti-parallel
Strand 3	A	296	298	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	309	314	parallel
Strand 3	A	285	290	anti-parallel
Strand 4	A	275	281	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	138	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	147	first strand
Strand 2	A	153	158	anti-parallel
Strand 3	A	213	217	anti-parallel
Strand 4	A	205	210	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	334	first strand
Strand 2	A	618	622	anti-parallel
Strand 3	A	354	358	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	513	first strand
Strand 2	A	478	484	parallel
Strand 3	A	529	533	parallel
Strand 4	A	363	369	anti-parallel
Strand 5	A	610	615	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	625	626	first strand
Strand 2	A	650	651	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	71	73	anti-parallel
Strand 3	B	296	298	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	93	first strand
Strand 2	B	309	314	parallel
Strand 3	B	285	290	anti-parallel
Strand 4	B	275	281	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	138	139	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	147	first strand
Strand 2	B	153	158	anti-parallel
Strand 3	B	213	217	anti-parallel
Strand 4	B	205	210	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	334	first strand
Strand 2	B	618	622	anti-parallel
Strand 3	B	354	358	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	513	first strand
Strand 2	B	478	484	parallel
Strand 3	B	529	533	parallel
Strand 4	B	363	369	anti-parallel
Strand 5	B	610	615	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	625	626	first strand
Strand 2	B	650	651	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	37	first strand
Strand 2	C	71	73	anti-parallel
Strand 3	C	296	298	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	309	314	parallel
Strand 3	C	285	290	anti-parallel
Strand 4	C	275	281	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	123	first strand
Strand 2	C	138	139	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	147	first strand
Strand 2	C	153	158	anti-parallel
Strand 3	C	213	217	anti-parallel
Strand 4	C	205	210	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	334	first strand
Strand 2	C	618	622	anti-parallel
Strand 3	C	354	358	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	507	513	first strand
Strand 2	C	478	484	parallel
Strand 3	C	529	533	parallel
Strand 4	C	363	369	anti-parallel
Strand 5	C	610	615	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	625	626	first strand
Strand 2	C	650	651	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	37	first strand
Strand 2	D	71	73	anti-parallel
Strand 3	D	296	298	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	93	first strand
Strand 2	D	309	314	parallel
Strand 3	D	285	290	anti-parallel
Strand 4	D	275	281	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	123	first strand
Strand 2	D	138	139	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	147	first strand
Strand 2	D	153	158	anti-parallel
Strand 3	D	213	217	anti-parallel
Strand 4	D	205	210	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	334	first strand
Strand 2	D	618	622	anti-parallel
Strand 3	D	354	358	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	507	513	first strand
Strand 2	D	478	484	parallel
Strand 3	D	529	533	parallel
Strand 4	D	363	369	anti-parallel
Strand 5	D	610	615	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	625	626	first strand
Strand 2	D	650	651	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EPY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EPY