Analysis of interatomic Contacts of Structural Units in PDB entry:
6EQ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EQ0 entry

There are 2 chains in PDB entry 6EQ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 8	HIS 678
B	ALA 8	THR 604

There are 50 helices in PDB entry 6EQ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	33	Right-handed 310
Helix 2	AA2	A	46	53	Right-handed alpha
Helix 3	AA3	A	61	66	Right-handed alpha
Helix 4	AA4	A	124	130	Right-handed 310
Helix 5	AA5	A	171	182	Right-handed alpha
Helix 6	AA6	A	196	201	Right-handed 310
Helix 7	AA7	A	225	230	Right-handed alpha
Helix 8	AA8	A	239	244	Right-handed alpha
Helix 9	AA9	A	245	247	Right-handed 310
Helix 10	AB1	A	254	260	Right-handed alpha
Helix 11	AB2	A	316	326	Right-handed alpha
Helix 12	AB3	A	339	349	Right-handed alpha
Helix 13	AB4	A	380	391	Right-handed alpha
Helix 14	AB5	A	392	402	Right-handed alpha
Helix 15	AB6	A	404	411	Right-handed alpha
Helix 16	AB7	A	443	455	Right-handed alpha
Helix 17	AB8	A	471	475	Right-handed 310
Helix 18	AB9	A	487	505	Right-handed alpha
Helix 19	AC1	A	514	524	Right-handed alpha
Helix 20	AC2	A	535	540	Right-handed alpha
Helix 21	AC3	A	544	549	Right-handed 310
Helix 22	AC4	A	570	585	Right-handed alpha
Helix 23	AC5	A	588	607	Right-handed alpha
Helix 24	AC6	A	639	644	Right-handed alpha
Helix 25	AC7	A	645	649	Right-handed 310
Helix 26	AC8	B	30	33	Right-handed 310
Helix 27	AC9	B	46	53	Right-handed alpha
Helix 28	AD1	B	61	66	Right-handed alpha
Helix 29	AD2	B	124	130	Right-handed 310
Helix 30	AD3	B	171	182	Right-handed alpha
Helix 31	AD4	B	196	201	Right-handed 310
Helix 32	AD5	B	225	230	Right-handed alpha
Helix 33	AD6	B	239	244	Right-handed alpha
Helix 34	AD7	B	245	247	Right-handed 310
Helix 35	AD8	B	254	260	Right-handed alpha
Helix 36	AD9	B	316	326	Right-handed alpha
Helix 37	AE1	B	339	349	Right-handed alpha
Helix 38	AE2	B	380	391	Right-handed alpha
Helix 39	AE3	B	392	402	Right-handed alpha
Helix 40	AE4	B	404	411	Right-handed alpha
Helix 41	AE5	B	443	455	Right-handed alpha
Helix 42	AE6	B	471	475	Right-handed 310
Helix 43	AE7	B	487	505	Right-handed alpha
Helix 44	AE8	B	514	524	Right-handed alpha
Helix 45	AE9	B	535	540	Right-handed alpha
Helix 46	AF1	B	544	549	Right-handed 310
Helix 47	AF2	B	570	585	Right-handed alpha
Helix 48	AF3	B	588	607	Right-handed alpha
Helix 49	AF4	B	639	644	Right-handed alpha
Helix 50	AF5	B	645	649	Right-handed 310

There are 14 sheets in PDB entry 6EQ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	71	73	anti-parallel
Strand 3	A	296	298	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	309	314	parallel
Strand 3	A	285	290	anti-parallel
Strand 4	A	275	281	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	138	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	147	first strand
Strand 2	A	153	158	anti-parallel
Strand 3	A	213	217	anti-parallel
Strand 4	A	205	210	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	334	first strand
Strand 2	A	618	622	anti-parallel
Strand 3	A	354	358	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	513	first strand
Strand 2	A	478	484	parallel
Strand 3	A	529	533	parallel
Strand 4	A	363	369	anti-parallel
Strand 5	A	610	615	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	667	first strand
Strand 2	A	675	676	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	71	73	anti-parallel
Strand 3	B	296	298	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	93	first strand
Strand 2	B	309	314	parallel
Strand 3	B	285	290	anti-parallel
Strand 4	B	275	281	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	138	139	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	147	first strand
Strand 2	B	153	158	anti-parallel
Strand 3	B	213	217	anti-parallel
Strand 4	B	205	210	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	334	first strand
Strand 2	B	618	622	anti-parallel
Strand 3	B	354	358	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	513	first strand
Strand 2	B	478	484	parallel
Strand 3	B	529	533	parallel
Strand 4	B	363	369	anti-parallel
Strand 5	B	610	615	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	666	667	first strand
Strand 2	B	675	676	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EQ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EQ0