Analysis of interatomic Contacts of Structural Units in PDB entry:
6EQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EQD entry

There are 3 chains in PDB entry 6EQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 29LEU 291
B
 THR 29GLU 292
C
 THR 29LEU 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6EQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 45Right-handed alpha
Helix 2
AA2
A
90 95Right-handed 310
Helix 3
AA3
A
96 103Right-handed alpha
Helix 4
AA4
A
119 139Right-handed alpha
Helix 5
AA5
A
160 173Right-handed alpha
Helix 6
AA6
A
210 213Right-handed 310
Helix 7
AA7
A
214 222Right-handed alpha
Helix 8
AA8
A
246 263Right-handed alpha
Helix 9
AA9
A
265 267Right-handed 310
Helix 10
AB1
A
268 274Right-handed alpha
Helix 11
AB2
B
39 45Right-handed alpha
Helix 12
AB3
B
90 95Right-handed 310
Helix 13
AB4
B
96 103Right-handed alpha
Helix 14
AB5
B
119 139Right-handed alpha
Helix 15
AB6
B
160 173Right-handed alpha
Helix 16
AB7
B
214 222Right-handed alpha
Helix 17
AB8
B
246 263Right-handed alpha
Helix 18
AB9
B
265 267Right-handed 310
Helix 19
AC1
B
268 274Right-handed alpha
Helix 20
AC2
C
39 45Right-handed alpha
Helix 21
AC3
C
90 95Right-handed 310
Helix 22
AC4
C
96 103Right-handed alpha
Helix 23
AC5
C
119 139Right-handed alpha
Helix 24
AC6
C
160 173Right-handed alpha
Helix 25
AC7
C
210 213Right-handed 310
Helix 26
AC8
C
214 222Right-handed alpha
Helix 27
AC9
C
246 263Right-handed alpha
Helix 28
AD1
C
265 267Right-handed 310
Helix 29
AD2
C
268 274Right-handed alpha
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There are 6 sheets in PDB entry 6EQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
65 71anti-parallel
Strand 3
A
107 112anti-parallel
Strand 4
A
78 84parallel
Strand 5
A
149 159parallel
Strand 6
A
178 182parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 203first strand
Strand 2
A
227 232parallel
Strand 3
A
281 287anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
65 71anti-parallel
Strand 3
B
107 112anti-parallel
Strand 4
B
78 84parallel
Strand 5
B
149 159parallel
Strand 6
B
178 182parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 203first strand
Strand 2
B
227 232parallel
Strand 3
B
281 287anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 56first strand
Strand 2
C
65 71anti-parallel
Strand 3
C
107 112anti-parallel
Strand 4
C
78 84parallel
Strand 5
C
149 159parallel
Strand 6
C
178 182parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
198 203first strand
Strand 2
C
227 232parallel
Strand 3
C
281 287anti-parallel
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