Analysis of interatomic Contacts of Structural Units in PDB entry:
6EQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EQJ entry

There is 1 chain in PDB entry 6EQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6EQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 29Right-handed alpha
Helix 2
AA2
A
44 53Right-handed alpha
Helix 3
AA3
A
70 77Right-handed alpha
Helix 4
AA4
A
80 87Right-handed alpha
Helix 5
AA5
A
88 92Right-handed 310
Helix 6
AA6
A
111 117Right-handed 310
Helix 7
AA7
A
142 156Right-handed alpha
Helix 8
AA8
A
162 171Right-handed alpha
Helix 9
AA9
A
178 182Right-handed 310
Helix 10
AB1
A
184 188Right-handed 310
Helix 11
AB2
A
199 205Right-handed alpha
Helix 12
AB3
A
206 208Right-handed 310
Helix 13
AB4
A
218 222Right-handed 310
Helix 14
AB5
A
244 256Right-handed alpha
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There are 2 sheets in PDB entry 6EQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
34 39parallel
Strand 3
A
4 10parallel
Strand 4
A
97 101parallel
Strand 5
A
132 139anti-parallel
Strand 6
A
121 124anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
210 212anti-parallel
Strand 3
A
189 190parallel
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