Analysis of interatomic Contacts of Structural Units in PDB entry:
6EQL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EQL entry

There are 3 chains in PDB entry 6EQL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 194
A
 SER 196LEU 261
B
 ASP 3LEU 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6EQL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 29Right-handed alpha
Helix 2
AA2
A
44 55Right-handed alpha
Helix 3
AA3
A
70 77Right-handed alpha
Helix 4
AA4
A
80 88Right-handed alpha
Helix 5
AA5
A
89 92Right-handed 310
Helix 6
AA6
A
111 117Right-handed 310
Helix 7
AA7
A
142 157Right-handed alpha
Helix 8
AA8
A
163 171Right-handed alpha
Helix 9
AA9
A
178 182Right-handed 310
Helix 10
AB1
A
184 188Right-handed 310
Helix 11
AB2
A
198 208Right-handed 310
Helix 12
AB3
A
218 222Right-handed 310
Helix 13
AB4
A
243 257Right-handed alpha
Helix 14
AB5
A
258 261Right-handed 310
Helix 15
AB6
B
12 29Right-handed alpha
Helix 16
AB7
B
44 55Right-handed alpha
Helix 17
AB8
B
70 77Right-handed alpha
Helix 18
AB9
B
80 87Right-handed alpha
Helix 19
AC1
B
88 92Right-handed 310
Helix 20
AC2
B
111 117Right-handed 310
Helix 21
AC3
B
142 157Right-handed alpha
Helix 22
AC4
B
158 162Right-handed 310
Helix 23
AC5
B
163 171Right-handed alpha
Helix 24
AC6
B
178 182Right-handed 310
Helix 25
AC7
B
184 188Right-handed 310
Helix 26
AC8
B
218 222Right-handed 310
Helix 27
AC9
B
244 257Right-handed alpha
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There are 4 sheets in PDB entry 6EQL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
34 39parallel
Strand 3
A
4 10parallel
Strand 4
A
97 101parallel
Strand 5
A
132 139anti-parallel
Strand 6
A
121 124anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
210 212anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
34 39parallel
Strand 3
B
4 10parallel
Strand 4
B
97 101parallel
Strand 5
B
132 139anti-parallel
Strand 6
B
121 124anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 107first strand
Strand 2
B
210 212anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il