Analysis of interatomic Contacts of Structural Units in PDB entry:
6ER9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ER9 entry

There are 2 chains in PDB entry 6ER9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	ALA 536
B	PRO 7	ALA 536

There are 47 helices in PDB entry 6ER9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	30	Right-handed alpha
Helix 2	AA2	A	47	52	Right-handed alpha
Helix 3	AA3	A	62	66	Right-handed 310
Helix 4	AA4	A	71	77	Right-handed alpha
Helix 5	AA5	A	86	101	Right-handed alpha
Helix 6	AA6	A	103	105	Right-handed 310
Helix 7	AA7	A	169	171	Right-handed 310
Helix 8	AA8	A	188	199	Right-handed alpha
Helix 9	AA9	A	224	233	Right-handed alpha
Helix 10	AB1	A	234	245	Right-handed alpha
Helix 11	AB2	A	257	261	Right-handed 310
Helix 12	AB3	A	262	277	Right-handed alpha
Helix 13	AB4	A	278	285	Right-handed alpha
Helix 14	AB5	A	293	312	Right-handed alpha
Helix 15	AB6	A	314	321	Right-handed alpha
Helix 16	AB7	A	337	343	Right-handed 310
Helix 17	AB8	A	387	392	Right-handed alpha
Helix 18	AB9	A	397	401	Right-handed 310
Helix 19	AC1	A	402	407	Right-handed alpha
Helix 20	AC2	A	437	459	Right-handed alpha
Helix 21	AC3	A	467	484	Right-handed alpha
Helix 22	AC4	A	485	490	Right-handed 310
Helix 23	AC5	A	492	496	Right-handed 310
Helix 24	AC6	A	512	526	Right-handed alpha
Helix 25	AC7	B	18	30	Right-handed alpha
Helix 26	AC8	B	47	52	Right-handed alpha
Helix 27	AC9	B	71	77	Right-handed alpha
Helix 28	AD1	B	87	101	Right-handed alpha
Helix 29	AD2	B	103	105	Right-handed 310
Helix 30	AD3	B	169	171	Right-handed 310
Helix 31	AD4	B	188	199	Right-handed alpha
Helix 32	AD5	B	224	234	Right-handed alpha
Helix 33	AD6	B	234	245	Right-handed alpha
Helix 34	AD7	B	257	261	Right-handed 310
Helix 35	AD8	B	262	277	Right-handed alpha
Helix 36	AD9	B	278	285	Right-handed alpha
Helix 37	AE1	B	293	312	Right-handed alpha
Helix 38	AE2	B	314	322	Right-handed alpha
Helix 39	AE3	B	338	343	Right-handed 310
Helix 40	AE4	B	387	392	Right-handed alpha
Helix 41	AE5	B	397	401	Right-handed 310
Helix 42	AE6	B	402	407	Right-handed alpha
Helix 43	AE7	B	437	460	Right-handed alpha
Helix 44	AE8	B	467	484	Right-handed alpha
Helix 45	AE9	B	485	490	Right-handed 310
Helix 46	AF1	B	492	496	Right-handed 310
Helix 47	AF2	B	512	526	Right-handed alpha

There are 15 sheets in PDB entry 6ER9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	36	40	parallel
Strand 3	A	8	15	parallel
Strand 4	A	134	142	parallel
Strand 5	A	124	129	anti-parallel
Strand 6	A	113	119	anti-parallel
Strand 7	A	394	396	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	36	40	parallel
Strand 3	A	8	15	parallel
Strand 4	A	134	142	parallel
Strand 5	A	425	427	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	167	first strand
Strand 2	A	376	379	parallel
Strand 3	A	181	185	parallel
Strand 4	A	204	209	parallel
Strand 5	A	346	350	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	332	334	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	359	first strand
Strand 2	A	363	366	anti-parallel
Strand 3	A	370	373	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	434	first strand
Strand 2	A	508	509	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	466	first strand
Strand 2	A	531	535	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	109	first strand
Strand 2	B	36	40	parallel
Strand 3	B	8	15	parallel
Strand 4	B	134	142	parallel
Strand 5	B	124	128	anti-parallel
Strand 6	B	115	119	anti-parallel
Strand 7	B	394	396	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	109	first strand
Strand 2	B	36	40	parallel
Strand 3	B	8	15	parallel
Strand 4	B	134	142	parallel
Strand 5	B	425	427	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	84	86	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	167	first strand
Strand 2	B	376	379	parallel
Strand 3	B	181	185	parallel
Strand 4	B	204	209	parallel
Strand 5	B	346	350	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	217	first strand
Strand 2	B	332	334	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	359	first strand
Strand 2	B	363	366	anti-parallel
Strand 3	B	371	373	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	434	first strand
Strand 2	B	508	509	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	466	first strand
Strand 2	B	531	534	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ER9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ER9