Analysis of interatomic Contacts of Structural Units in PDB entry:
6ERP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ERP entry

There are 7 chains in PDB entry 6ERP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 43	THR 234
D	T 1	C 50
E	G 1	A 50
G	SER 43	THR 234
H	T 1	C 50
I	G 1	A 50
A	TRP 122	LEU 569

There are147 helices in PDB entry 6ERP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	44	49	Right-handed alpha
Helix 2	AA2	C	55	72	Right-handed alpha
Helix 3	AA3	C	76	91	Right-handed alpha
Helix 4	AA4	C	92	121	Right-handed alpha
Helix 5	AA5	C	122	152	Right-handed alpha
Helix 6	AA6	C	160	170	Right-handed alpha
Helix 7	AA7	C	177	191	Right-handed alpha
Helix 8	AA8	C	197	225	Right-handed alpha
Helix 9	AA9	C	227	231	Right-handed 310
Helix 10	AB1	G	44	49	Right-handed alpha
Helix 11	AB2	G	55	72	Right-handed alpha
Helix 12	AB3	G	76	91	Right-handed alpha
Helix 13	AB4	G	92	121	Right-handed alpha
Helix 14	AB5	G	122	152	Right-handed alpha
Helix 15	AB6	G	160	170	Right-handed alpha
Helix 16	AB7	G	177	191	Right-handed alpha
Helix 17	AB8	G	197	225	Right-handed alpha
Helix 18	AB9	G	227	231	Right-handed 310
Helix 19	AC1	A	123	146	Right-handed alpha
Helix 20	AC2	A	220	237	Right-handed alpha
Helix 21	AC3	A	238	252	Right-handed alpha
Helix 22	AC4	A	252	257	Right-handed alpha
Helix 23	AC5	A	260	275	Right-handed alpha
Helix 24	AC6	A	276	290	Right-handed alpha
Helix 25	AC7	A	295	310	Right-handed alpha
Helix 26	AC8	A	312	327	Right-handed alpha
Helix 27	AC9	A	330	337	Right-handed alpha
Helix 28	AD1	A	340	355	Right-handed alpha
Helix 29	AD2	A	374	379	Right-handed alpha
Helix 30	AD3	A	392	410	Right-handed alpha
Helix 31	AD4	A	425	462	Right-handed alpha
Helix 32	AD5	A	467	472	Right-handed alpha
Helix 33	AD6	A	475	490	Right-handed alpha
Helix 34	AD7	A	497	520	Right-handed alpha
Helix 35	AD8	A	521	534	Right-handed alpha
Helix 36	AD9	A	548	557	Right-handed alpha
Helix 37	AE1	A	568	587	Right-handed alpha
Helix 38	AE2	A	624	635	Right-handed alpha
Helix 39	AE3	A	644	646	Right-handed 310
Helix 40	AE4	A	676	687	Right-handed alpha
Helix 41	AE5	A	688	691	Right-handed 310
Helix 42	AE6	A	692	704	Right-handed alpha
Helix 43	AE7	A	710	723	Right-handed alpha
Helix 44	AE8	A	726	730	Right-handed 310
Helix 45	AE9	A	734	738	Right-handed 310
Helix 46	AF1	A	762	789	Right-handed alpha
Helix 47	AF2	A	818	824	Right-handed alpha
Helix 48	AF3	A	836	850	Right-handed alpha
Helix 49	AF4	A	856	867	Right-handed alpha
Helix 50	AF5	A	867	877	Right-handed alpha
Helix 51	AF6	A	884	888	Right-handed 310
Helix 52	AF7	A	890	906	Right-handed alpha
Helix 53	AF8	A	909	912	Right-handed 310
Helix 54	AF9	A	925	935	Right-handed alpha
Helix 55	AG1	A	937	944	Right-handed alpha
Helix 56	AG2	A	954	973	Right-handed alpha
Helix 57	AG3	A	975	981	Right-handed alpha
Helix 58	AG4	A	986	1000	Right-handed alpha
Helix 59	AG5	A	1004	1016	Right-handed alpha
Helix 60	AG6	A	1024	1044	Right-handed alpha
Helix 61	AG7	A	1044	1064	Right-handed alpha
Helix 62	AG8	A	1111	1142	Right-handed alpha
Helix 63	AG9	A	1156	1158	Right-handed 310
Helix 64	AH1	A	1159	1177	Right-handed alpha
Helix 65	AH2	A	1178	1192	Right-handed alpha
Helix 66	AH3	A	1198	1209	Right-handed alpha
Helix 67	AH4	A	1218	1225	Right-handed 310
Helix 68	AH5	B	123	146	Right-handed alpha
Helix 69	AH6	B	220	237	Right-handed alpha
Helix 70	AH7	B	238	252	Right-handed alpha
Helix 71	AH8	B	252	257	Right-handed alpha
Helix 72	AH9	B	260	275	Right-handed alpha
Helix 73	AI1	B	276	290	Right-handed alpha
Helix 74	AI2	B	295	310	Right-handed alpha
Helix 75	AI3	B	312	327	Right-handed alpha
Helix 76	AI4	B	329	337	Right-handed alpha
Helix 77	AI5	B	340	355	Right-handed alpha
Helix 78	AI6	B	374	379	Right-handed alpha
Helix 79	AI7	B	392	410	Right-handed alpha
Helix 80	AI8	B	425	462	Right-handed alpha
Helix 81	AI9	B	467	472	Right-handed alpha
Helix 82	AJ1	B	475	490	Right-handed alpha
Helix 83	AJ2	B	497	520	Right-handed alpha
Helix 84	AJ3	B	521	538	Right-handed alpha
Helix 85	AJ4	B	548	557	Right-handed alpha
Helix 86	AJ5	B	568	587	Right-handed alpha
Helix 87	AJ6	B	624	635	Right-handed alpha
Helix 88	AJ7	B	644	646	Right-handed 310
Helix 89	AJ8	B	678	687	Right-handed alpha
Helix 90	AJ9	B	688	691	Right-handed 310
Helix 91	AK1	B	692	704	Right-handed alpha
Helix 92	AK2	B	710	723	Right-handed alpha
Helix 93	AK3	B	726	730	Right-handed 310
Helix 94	AK4	B	765	789	Right-handed alpha
Helix 95	AK5	B	818	824	Right-handed alpha
Helix 96	AK6	B	836	850	Right-handed alpha
Helix 97	AK7	B	856	867	Right-handed alpha
Helix 98	AK8	B	867	877	Right-handed alpha
Helix 99	AK9	B	884	888	Right-handed 310
Helix 100	AL1	B	890	906	Right-handed alpha
Helix 101	AL2	B	909	912	Right-handed 310
Helix 102	AL3	B	925	935	Right-handed alpha
Helix 103	AL4	B	937	944	Right-handed alpha
Helix 104	AL5	B	954	973	Right-handed alpha
Helix 105	AL6	B	975	981	Right-handed alpha
Helix 106	AL7	B	986	1000	Right-handed alpha
Helix 107	AL8	B	1004	1016	Right-handed alpha
Helix 108	AL9	B	1024	1044	Right-handed alpha
Helix 109	AM1	B	1044	1064	Right-handed alpha
Helix 110	AM2	B	1111	1142	Right-handed alpha
Helix 111	AM3	B	1156	1158	Right-handed 310
Helix 112	AM4	B	1159	1177	Right-handed alpha
Helix 113	AM5	B	1178	1192	Right-handed alpha
Helix 114	AM6	B	1198	1209	Right-handed alpha
Helix 115	AM7	B	1218	1225	Right-handed 310
Helix 116	AM8	F	77	90	Right-handed alpha
Helix 117	AM9	F	107	117	Right-handed alpha
Helix 118	AN1	F	126	128	Right-handed 310
Helix 119	AN2	F	129	141	Right-handed alpha
Helix 120	AN3	F	150	154	Right-handed 310
Helix 121	AN4	F	168	177	Right-handed alpha
Helix 122	AN5	F	199	214	Right-handed alpha
Helix 123	AN6	F	215	221	Right-handed 310
Helix 124	AN7	F	231	239	Right-handed alpha
Helix 125	AN8	F	243	247	Right-handed 310
Helix 126	AN9	F	248	257	Right-handed alpha
Helix 127	AO1	F	316	330	Right-handed alpha
Helix 128	AO2	F	334	340	Right-handed alpha
Helix 129	AO3	F	346	354	Right-handed alpha
Helix 130	AO4	F	361	365	Right-handed 310
Helix 131	AO5	F	366	380	Right-handed alpha
Helix 132	AO6	J	77	90	Right-handed alpha
Helix 133	AO7	J	107	117	Right-handed alpha
Helix 134	AO8	J	126	128	Right-handed 310
Helix 135	AO9	J	129	141	Right-handed alpha
Helix 136	AP1	J	150	154	Right-handed 310
Helix 137	AP2	J	168	177	Right-handed alpha
Helix 138	AP3	J	199	214	Right-handed alpha
Helix 139	AP4	J	215	221	Right-handed 310
Helix 140	AP5	J	231	239	Right-handed alpha
Helix 141	AP6	J	243	247	Right-handed 310
Helix 142	AP7	J	248	257	Right-handed alpha
Helix 143	AP8	J	316	330	Right-handed alpha
Helix 144	AP9	J	334	340	Right-handed alpha
Helix 145	AQ1	J	346	354	Right-handed alpha
Helix 146	AQ2	J	361	365	Right-handed 310
Helix 147	AQ3	J	366	380	Right-handed alpha

There are 24 sheets in PDB entry 6ERP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	415	first strand
Strand 2	A	638	642	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	496	first strand
Strand 2	A	618	623	anti-parallel
Strand 3	A	606	611	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	590	first strand
Strand 2	A	602	604	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	657	first strand
Strand 2	A	660	662	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	794	795	first strand
Strand 2	A	706	709	anti-parallel
Strand 3	A	825	827	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	798	800	first strand
Strand 2	A	806	808	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	831	832	first strand
Strand 2	A	914	915	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1147	1149	first strand
Strand 2	A	1152	1155	anti-parallel
Strand 3	A	919	923	anti-parallel
Strand 4	A	1229	1230	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1069	1071	first strand
Strand 2	A	1077	1079	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1083	1084	first strand
Strand 2	A	1109	1110	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1088	1089	first strand
Strand 2	A	1101	1102	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	415	first strand
Strand 2	B	638	642	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	496	first strand
Strand 2	B	618	623	anti-parallel
Strand 3	B	606	611	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	590	first strand
Strand 2	B	602	604	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	653	657	first strand
Strand 2	B	660	662	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	794	795	first strand
Strand 2	B	706	709	anti-parallel
Strand 3	B	825	827	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	798	800	first strand
Strand 2	B	806	808	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	831	832	first strand
Strand 2	B	914	915	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	919	921	first strand
Strand 2	B	1152	1155	anti-parallel
Strand 3	B	1147	1149	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1069	1071	first strand
Strand 2	B	1077	1079	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1083	1084	first strand
Strand 2	B	1109	1110	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1088	1089	first strand
Strand 2	B	1101	1102	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	148	first strand
Strand 2	F	119	124	parallel
Strand 3	F	98	102	parallel
Strand 4	F	190	194	parallel
Strand 5	F	224	230	parallel
Strand 6	F	296	303	anti-parallel
Strand 7	F	258	266	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	145	148	first strand
Strand 2	J	120	124	parallel
Strand 3	J	99	102	parallel
Strand 4	J	190	194	parallel
Strand 5	J	224	230	parallel
Strand 6	J	296	303	anti-parallel
Strand 7	J	258	266	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ERP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ERP