Analysis of interatomic Contacts of Structural Units in PDB entry:
6EU4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EU4 entry

There are 2 chains in PDB entry 6EU4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 16	VAL 602
B	VAL 16	ASN 87

There are 20 helices in PDB entry 6EU4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	27	Right-handed 310
Helix 2	AA2	A	65	68	Right-handed 310
Helix 3	AA3	A	90	95	Right-handed 310
Helix 4	AA4	A	105	114	Right-handed alpha
Helix 5	AA5	A	399	403	Right-handed 310
Helix 6	AA6	A	486	490	Right-handed 310
Helix 7	AA7	B	23	28	Right-handed 310
Helix 8	AA8	B	65	68	Right-handed 310
Helix 9	AA9	B	90	95	Right-handed 310
Helix 10	AB1	B	105	114	Right-handed alpha
Helix 11	AB2	B	399	403	Right-handed 310
Helix 12	AB3	B	463	466	Right-handed 310
Helix 13	AB4	B	486	490	Right-handed 310
Helix 14	AB5	B	503	507	Right-handed 310
Helix 15	AB6	C	23	28	Right-handed 310
Helix 16	AB7	C	65	68	Right-handed 310
Helix 17	AB8	C	90	95	Right-handed 310
Helix 18	AB9	C	105	114	Right-handed alpha
Helix 19	AC1	C	399	403	Right-handed 310
Helix 20	AC2	C	486	490	Right-handed 310

There are 27 sheets in PDB entry 6EU4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	38	40	parallel
Strand 3	A	59	63	anti-parallel
Strand 4	A	80	82	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	118	120	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	127	first strand
Strand 2	A	148	151	parallel
Strand 3	A	196	200	parallel
Strand 4	A	224	227	parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	140	first strand
Strand 2	A	192	194	parallel
Strand 3	A	220	222	parallel
Strand 4	A	241	244	parallel
Strand 5	A	271	274	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	237	239	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	249	first strand
Strand 2	A	277	279	parallel
Strand 3	A	300	302	parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	286	289	parallel
Strand 3	A	315	318	parallel
Strand 4	A	338	341	parallel
Strand 5	A	373	376	parallel
Strand 6	A	407	409	parallel
Strand 7	A	443	445	parallel
Strand 8	A	430	432	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	348	first strand
Strand 2	A	380	384	parallel
Strand 3	A	414	417	parallel
Strand 4	A	450	455	parallel
Strand 5	A	458	462	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	501	first strand
Strand 2	A	519	526	anti-parallel
Strand 3	A	535	542	anti-parallel
Strand 4	A	547	554	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	21	first strand
Strand 2	B	38	40	parallel
Strand 3	B	59	63	anti-parallel
Strand 4	B	80	82	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	118	120	parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	127	first strand
Strand 2	B	148	151	parallel
Strand 3	B	196	200	parallel
Strand 4	B	224	227	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	140	first strand
Strand 2	B	192	194	parallel
Strand 3	B	220	222	parallel
Strand 4	B	241	244	parallel
Strand 5	B	271	274	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	217	first strand
Strand 2	B	237	239	parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	249	first strand
Strand 2	B	277	279	parallel
Strand 3	B	300	302	parallel

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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	286	289	parallel
Strand 3	B	315	318	parallel
Strand 4	B	338	341	parallel
Strand 5	B	373	376	parallel
Strand 6	B	407	409	parallel
Strand 7	B	443	445	parallel
Strand 8	B	430	432	parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	348	first strand
Strand 2	B	380	384	parallel
Strand 3	B	414	417	parallel
Strand 4	B	450	455	parallel
Strand 5	B	458	462	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	501	first strand
Strand 2	B	519	526	anti-parallel
Strand 3	B	535	542	anti-parallel
Strand 4	B	547	554	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	21	first strand
Strand 2	C	38	40	parallel
Strand 3	C	59	63	anti-parallel
Strand 4	C	80	82	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	90	first strand
Strand 2	C	118	120	parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	127	first strand
Strand 2	C	148	151	parallel
Strand 3	C	196	200	parallel
Strand 4	C	224	227	parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	140	first strand
Strand 2	C	192	194	parallel
Strand 3	C	220	222	parallel
Strand 4	C	241	244	parallel
Strand 5	C	271	274	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	217	first strand
Strand 2	C	237	239	parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	249	first strand
Strand 2	C	277	279	parallel
Strand 3	C	300	302	parallel

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There are 8 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	286	289	parallel
Strand 3	C	315	318	parallel
Strand 4	C	338	341	parallel
Strand 5	C	373	376	parallel
Strand 6	C	407	409	parallel
Strand 7	C	443	445	parallel
Strand 8	C	430	432	parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	348	first strand
Strand 2	C	380	384	parallel
Strand 3	C	414	417	parallel
Strand 4	C	450	455	parallel
Strand 5	C	458	462	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	497	501	first strand
Strand 2	C	519	526	anti-parallel
Strand 3	C	535	542	anti-parallel
Strand 4	C	547	554	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EU4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EU4