Analysis of interatomic Contacts of Structural Units in PDB entry:
6EUA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EUA entry

There are 3 chains in PDB entry 6EUA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 241	ASP 455
B	MET 241	THR 454
C	MET 241	THR 454

There are 15 helices in PDB entry 6EUA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	245	252	Right-handed alpha
Helix 2	AA2	A	298	305	Right-handed alpha
Helix 3	AA3	A	316	325	Right-handed alpha
Helix 4	AA4	A	353	357	Right-handed 310
Helix 5	AA5	A	394	398	Right-handed 310
Helix 6	AA6	B	245	252	Right-handed alpha
Helix 7	AA7	B	298	305	Right-handed alpha
Helix 8	AA8	B	316	325	Right-handed alpha
Helix 9	AA9	B	353	357	Right-handed 310
Helix 10	AB1	B	394	398	Right-handed 310
Helix 11	AB2	C	245	252	Right-handed alpha
Helix 12	AB3	C	298	305	Right-handed alpha
Helix 13	AB4	C	316	325	Right-handed alpha
Helix 14	AB5	C	353	357	Right-handed 310
Helix 15	AB6	C	394	398	Right-handed 310

There are 9 sheets in PDB entry 6EUA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	262	first strand
Strand 2	A	270	277	anti-parallel
Strand 3	A	280	288	anti-parallel
Strand 4	A	441	453	anti-parallel
Strand 5	A	329	337	anti-parallel
Strand 6	A	342	351	anti-parallel
Strand 7	A	360	367	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	307	first strand
Strand 2	A	313	314	anti-parallel
Strand 3	A	280	288	anti-parallel
Strand 4	A	441	453	anti-parallel
Strand 5	A	432	435	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	382	first strand
Strand 2	A	402	404	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	262	first strand
Strand 2	B	270	277	anti-parallel
Strand 3	B	280	288	anti-parallel
Strand 4	B	442	453	anti-parallel
Strand 5	B	329	337	anti-parallel
Strand 6	B	342	351	anti-parallel
Strand 7	B	360	367	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	307	first strand
Strand 2	B	313	314	anti-parallel
Strand 3	B	280	288	anti-parallel
Strand 4	B	442	453	anti-parallel
Strand 5	B	432	434	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	382	first strand
Strand 2	B	402	404	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	262	first strand
Strand 2	C	270	277	anti-parallel
Strand 3	C	280	288	anti-parallel
Strand 4	C	442	452	anti-parallel
Strand 5	C	329	337	anti-parallel
Strand 6	C	342	351	anti-parallel
Strand 7	C	360	367	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	307	first strand
Strand 2	C	313	314	anti-parallel
Strand 3	C	280	288	anti-parallel
Strand 4	C	442	452	anti-parallel
Strand 5	C	432	434	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	382	first strand
Strand 2	C	402	404	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EUA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EUA