Analysis of interatomic Contacts of Structural Units in PDB entry:
6EUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EUB entry

There is 1 chain in PDB entry 6EUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 184MET 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6EUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
187 194Right-handed alpha
Helix 2
AA2
A
240 247Right-handed alpha
Helix 3
AA3
A
258 267Right-handed alpha
Helix 4
AA4
A
295 299Right-handed 310
Helix 5
AA5
A
305 312Right-handed alpha
Helix 6
AA6
A
340 345Right-handed alpha
Helix 7
AA7
A
373 377Right-handed 310
Helix 8
AA8
A
381 385Right-handed alpha
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There are 3 sheets in PDB entry 6EUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 204first strand
Strand 2
A
212 219anti-parallel
Strand 3
A
222 230anti-parallel
Strand 4
A
255 256anti-parallel
Strand 5
A
248 249anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 204first strand
Strand 2
A
212 219anti-parallel
Strand 3
A
222 230anti-parallel
Strand 4
A
392 399anti-parallel
Strand 5
A
271 278anti-parallel
Strand 6
A
284 293anti-parallel
Strand 7
A
302 304anti-parallel
Strand 8
A
322 324anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
379 380anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il