Analysis of interatomic Contacts of Structural Units in PDB entry:
6EUF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EUF entry

There are 4 chains in PDB entry 6EUF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	MET 472
B	GLN 1	MET 472
C	GLN 1	MET 472
D	GLN 1	MET 472

There are 28 helices in PDB entry 6EUF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	135	139	Right-handed 310
Helix 2	AA2	A	241	245	Right-handed 310
Helix 3	AA3	A	274	278	Right-handed 310
Helix 4	AA4	A	301	306	Right-handed 310
Helix 5	AA5	A	391	394	Right-handed 310
Helix 6	AA6	A	421	423	Right-handed 310
Helix 7	AA7	A	461	472	Right-handed alpha
Helix 8	AA8	B	135	139	Right-handed 310
Helix 9	AA9	B	241	245	Right-handed 310
Helix 10	AB1	B	274	278	Right-handed 310
Helix 11	AB2	B	303	308	Right-handed alpha
Helix 12	AB3	B	391	394	Right-handed 310
Helix 13	AB4	B	421	423	Right-handed 310
Helix 14	AB5	B	461	472	Right-handed alpha
Helix 15	AB6	C	135	139	Right-handed 310
Helix 16	AB7	C	241	245	Right-handed 310
Helix 17	AB8	C	274	278	Right-handed 310
Helix 18	AB9	C	301	307	Right-handed 310
Helix 19	AC1	C	391	394	Right-handed 310
Helix 20	AC2	C	421	423	Right-handed 310
Helix 21	AC3	C	461	472	Right-handed alpha
Helix 22	AC4	D	94	97	Right-handed 310
Helix 23	AC5	D	135	139	Right-handed 310
Helix 24	AC6	D	241	248	Right-handed 310
Helix 25	AC7	D	274	278	Right-handed 310
Helix 26	AC8	D	301	306	Right-handed 310
Helix 27	AC9	D	421	423	Right-handed 310
Helix 28	AD1	D	461	472	Right-handed alpha

There are 36 sheets in PDB entry 6EUF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	29	first strand
Strand 2	A	32	41	anti-parallel
Strand 3	A	44	53	anti-parallel
Strand 4	A	60	67	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	93	first strand
Strand 2	A	98	106	anti-parallel
Strand 3	A	115	121	anti-parallel
Strand 4	A	129	134	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	154	160	anti-parallel
Strand 3	A	165	171	anti-parallel
Strand 4	A	178	185	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	199	first strand
Strand 2	A	202	208	anti-parallel
Strand 3	A	219	223	anti-parallel
Strand 4	A	231	232	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	255	first strand
Strand 2	A	263	269	anti-parallel
Strand 3	A	279	286	anti-parallel
Strand 4	A	293	294	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	313	first strand
Strand 2	A	443	448	anti-parallel
Strand 3	A	322	327	anti-parallel
Strand 4	A	332	335	anti-parallel
Strand 5	A	342	344	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	313	first strand
Strand 2	A	443	448	anti-parallel
Strand 3	A	406	410	anti-parallel
Strand 4	A	396	400	anti-parallel
Strand 5	A	364	369	anti-parallel
Strand 6	A	354	357	anti-parallel
Strand 7	A	322	327	anti-parallel
Strand 8	A	332	335	anti-parallel
Strand 9	A	342	344	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	382	386	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	419	first strand
Strand 2	A	430	433	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	29	first strand
Strand 2	B	32	41	anti-parallel
Strand 3	B	44	53	anti-parallel
Strand 4	B	60	67	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	93	first strand
Strand 2	B	98	106	anti-parallel
Strand 3	B	115	121	anti-parallel
Strand 4	B	129	134	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	148	first strand
Strand 2	B	154	160	anti-parallel
Strand 3	B	165	171	anti-parallel
Strand 4	B	178	185	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	199	first strand
Strand 2	B	202	208	anti-parallel
Strand 3	B	219	223	anti-parallel
Strand 4	B	231	232	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	255	first strand
Strand 2	B	263	269	anti-parallel
Strand 3	B	279	286	anti-parallel
Strand 4	B	293	294	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	313	first strand
Strand 2	B	443	448	anti-parallel
Strand 3	B	322	327	anti-parallel
Strand 4	B	332	335	anti-parallel
Strand 5	B	342	344	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	313	first strand
Strand 2	B	443	448	anti-parallel
Strand 3	B	406	410	anti-parallel
Strand 4	B	396	400	anti-parallel
Strand 5	B	364	369	anti-parallel
Strand 6	B	354	358	anti-parallel
Strand 7	B	322	327	anti-parallel
Strand 8	B	332	335	anti-parallel
Strand 9	B	342	344	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	379	first strand
Strand 2	B	382	386	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	419	first strand
Strand 2	B	430	433	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	29	first strand
Strand 2	C	32	41	anti-parallel
Strand 3	C	44	53	anti-parallel
Strand 4	C	60	67	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	93	first strand
Strand 2	C	98	106	anti-parallel
Strand 3	C	115	121	anti-parallel
Strand 4	C	129	134	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	154	160	anti-parallel
Strand 3	C	165	171	anti-parallel
Strand 4	C	178	185	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	199	first strand
Strand 2	C	202	208	anti-parallel
Strand 3	C	219	223	anti-parallel
Strand 4	C	231	232	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	255	first strand
Strand 2	C	263	269	anti-parallel
Strand 3	C	279	286	anti-parallel
Strand 4	C	293	294	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	313	first strand
Strand 2	C	443	448	anti-parallel
Strand 3	C	322	327	anti-parallel
Strand 4	C	332	335	anti-parallel
Strand 5	C	342	344	anti-parallel

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There are 9 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	313	first strand
Strand 2	C	443	448	anti-parallel
Strand 3	C	406	410	anti-parallel
Strand 4	C	396	400	anti-parallel
Strand 5	C	364	369	anti-parallel
Strand 6	C	354	357	anti-parallel
Strand 7	C	322	327	anti-parallel
Strand 8	C	332	335	anti-parallel
Strand 9	C	342	344	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	379	first strand
Strand 2	C	382	386	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	416	419	first strand
Strand 2	C	430	433	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	29	first strand
Strand 2	D	32	41	anti-parallel
Strand 3	D	44	53	anti-parallel
Strand 4	D	60	67	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	93	first strand
Strand 2	D	98	106	anti-parallel
Strand 3	D	115	121	anti-parallel
Strand 4	D	129	134	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	148	first strand
Strand 2	D	154	160	anti-parallel
Strand 3	D	165	171	anti-parallel
Strand 4	D	178	185	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	199	first strand
Strand 2	D	202	208	anti-parallel
Strand 3	D	219	223	anti-parallel
Strand 4	D	231	232	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	255	first strand
Strand 2	D	263	269	anti-parallel
Strand 3	D	279	286	anti-parallel
Strand 4	D	293	294	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	313	first strand
Strand 2	D	443	448	anti-parallel
Strand 3	D	322	327	anti-parallel
Strand 4	D	332	335	anti-parallel
Strand 5	D	342	344	anti-parallel

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There are 9 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	313	first strand
Strand 2	D	443	448	anti-parallel
Strand 3	D	406	410	anti-parallel
Strand 4	D	395	400	anti-parallel
Strand 5	D	364	369	anti-parallel
Strand 6	D	354	358	anti-parallel
Strand 7	D	322	327	anti-parallel
Strand 8	D	332	335	anti-parallel
Strand 9	D	342	344	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	375	378	first strand
Strand 2	D	383	386	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	416	419	first strand
Strand 2	D	430	433	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EUF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EUF