Analysis of interatomic Contacts of Structural Units in PDB entry:
6EW9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EW9 entry

There are 6 chains in PDB entry 6EW9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 41	THR 354
B	GLY 41	THR 354
C	GLY 41	THR 354
P	LEU 6	PHE 10
Q	LEU 6	PHE 10
R	LEU 6	PHE 10

There are 18 helices in PDB entry 6EW9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	55	Right-handed alpha
Helix 2	AA2	A	94	99	Right-handed alpha
Helix 3	AA3	A	160	164	Right-handed 310
Helix 4	AA4	A	238	251	Right-handed alpha
Helix 5	AA5	A	291	297	Right-handed alpha
Helix 6	AA6	A	314	325	Right-handed alpha
Helix 7	AA7	B	47	55	Right-handed alpha
Helix 8	AA8	B	95	99	Right-handed alpha
Helix 9	AA9	B	160	164	Right-handed 310
Helix 10	AB1	B	238	252	Right-handed alpha
Helix 11	AB2	B	291	297	Right-handed alpha
Helix 12	AB3	B	314	325	Right-handed alpha
Helix 13	AB4	C	47	55	Right-handed alpha
Helix 14	AB5	C	95	99	Right-handed alpha
Helix 15	AB6	C	160	164	Right-handed 310
Helix 16	AB7	C	238	252	Right-handed alpha
Helix 17	AB8	C	291	296	Right-handed alpha
Helix 18	AB9	C	314	324	Right-handed alpha

There are 16 sheets in PDB entry 6EW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	65	first strand
Strand 2	A	75	84	anti-parallel
Strand 3	A	90	93	anti-parallel
Strand 4	A	127	131	anti-parallel
Strand 5	A	113	122	anti-parallel
Strand 6	A	104	107	anti-parallel
Strand 7	A	58	65	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	159	first strand
Strand 2	A	167	178	anti-parallel
Strand 3	A	189	192	anti-parallel
Strand 4	A	233	237	anti-parallel
Strand 5	A	212	219	anti-parallel
Strand 6	A	204	207	anti-parallel
Strand 7	A	154	159	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	258	first strand
Strand 2	A	349	350	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	311	first strand
Strand 2	A	303	307	anti-parallel
Strand 3	A	330	337	anti-parallel
Strand 4	A	340	347	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	311	first strand
Strand 2	A	303	307	anti-parallel
Strand 3	A	282	287	anti-parallel
Strand 4	A	261	265	anti-parallel
Strand 5	P	8	9	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	80	84	anti-parallel
Strand 3	B	90	94	anti-parallel
Strand 4	B	127	131	anti-parallel
Strand 5	B	113	122	anti-parallel
Strand 6	B	104	107	anti-parallel
Strand 7	B	58	63	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	159	first strand
Strand 2	B	167	178	anti-parallel
Strand 3	B	189	192	anti-parallel
Strand 4	B	233	237	anti-parallel
Strand 5	B	212	219	anti-parallel
Strand 6	B	204	207	anti-parallel
Strand 7	B	154	159	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	258	first strand
Strand 2	B	349	350	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	282	287	anti-parallel
Strand 3	B	261	265	anti-parallel
Strand 4	Q	8	9	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	336	first strand
Strand 2	B	341	347	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	66	first strand
Strand 2	C	74	84	anti-parallel
Strand 3	C	90	94	anti-parallel
Strand 4	C	127	131	anti-parallel
Strand 5	C	113	122	anti-parallel
Strand 6	C	103	107	anti-parallel
Strand 7	C	58	66	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	159	first strand
Strand 2	C	167	178	anti-parallel
Strand 3	C	189	192	anti-parallel
Strand 4	C	233	237	anti-parallel
Strand 5	C	212	219	anti-parallel
Strand 6	C	204	207	anti-parallel
Strand 7	C	154	159	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	258	first strand
Strand 2	C	349	350	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	287	first strand
Strand 2	C	261	263	anti-parallel
Strand 3	R	8	9	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	283	first strand
Strand 2	C	303	304	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	311	first strand
Strand 2	C	306	307	anti-parallel
Strand 3	C	330	337	anti-parallel
Strand 4	C	340	347	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EW9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EW9