Analysis of interatomic Contacts of Structural Units in PDB entry:
6EWJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EWJ entry

There are 4 chains in PDB entry 6EWJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 6	THR 404
D	TYR 4	THR 404
C	TYR 4	LYS 408
B	ASN 3	VAL 77

There are 70 helices in PDB entry 6EWJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	26	Right-handed alpha
Helix 2	AA2	A	33	48	Right-handed alpha
Helix 3	AA3	A	57	69	Right-handed alpha
Helix 4	AA4	A	85	94	Right-handed alpha
Helix 5	AA5	A	111	119	Right-handed alpha
Helix 6	AA6	A	130	134	Right-handed 310
Helix 7	AA7	A	137	148	Right-handed alpha
Helix 8	AA8	A	149	152	Right-handed 310
Helix 9	AA9	A	156	163	Right-handed alpha
Helix 10	AB1	A	218	231	Right-handed alpha
Helix 11	AB2	A	237	243	Right-handed alpha
Helix 12	AB3	A	261	294	Right-handed alpha
Helix 13	AB4	A	323	337	Right-handed alpha
Helix 14	AB5	A	347	350	Right-handed 310
Helix 15	AB6	A	351	356	Right-handed alpha
Helix 16	AB7	A	360	363	Right-handed 310
Helix 17	AB8	A	364	373	Right-handed alpha
Helix 18	AB9	A	384	404	Right-handed alpha
Helix 19	AC1	D	14	26	Right-handed alpha
Helix 20	AC2	D	33	48	Right-handed alpha
Helix 21	AC3	D	57	69	Right-handed alpha
Helix 22	AC4	D	84	94	Right-handed alpha
Helix 23	AC5	D	111	119	Right-handed alpha
Helix 24	AC6	D	130	134	Right-handed 310
Helix 25	AC7	D	137	148	Right-handed alpha
Helix 26	AC8	D	149	152	Right-handed 310
Helix 27	AC9	D	156	162	Right-handed alpha
Helix 28	AD1	D	218	231	Right-handed alpha
Helix 29	AD2	D	237	243	Right-handed alpha
Helix 30	AD3	D	261	294	Right-handed alpha
Helix 31	AD4	D	323	337	Right-handed alpha
Helix 32	AD5	D	347	350	Right-handed 310
Helix 33	AD6	D	351	356	Right-handed alpha
Helix 34	AD7	D	360	363	Right-handed 310
Helix 35	AD8	D	364	373	Right-handed alpha
Helix 36	AD9	D	384	404	Right-handed alpha
Helix 37	AE1	C	14	26	Right-handed alpha
Helix 38	AE2	C	33	48	Right-handed alpha
Helix 39	AE3	C	57	69	Right-handed alpha
Helix 40	AE4	C	84	94	Right-handed alpha
Helix 41	AE5	C	111	119	Right-handed alpha
Helix 42	AE6	C	130	134	Right-handed 310
Helix 43	AE7	C	137	148	Right-handed alpha
Helix 44	AE8	C	149	152	Right-handed 310
Helix 45	AE9	C	156	163	Right-handed alpha
Helix 46	AF1	C	218	231	Right-handed alpha
Helix 47	AF2	C	261	294	Right-handed alpha
Helix 48	AF3	C	323	337	Right-handed alpha
Helix 49	AF4	C	347	350	Right-handed 310
Helix 50	AF5	C	351	356	Right-handed alpha
Helix 51	AF6	C	360	363	Right-handed 310
Helix 52	AF7	C	364	373	Right-handed alpha
Helix 53	AF8	C	384	408	Right-handed alpha
Helix 54	AF9	B	14	26	Right-handed alpha
Helix 55	AG1	B	33	48	Right-handed alpha
Helix 56	AG2	B	57	69	Right-handed alpha
Helix 57	AG3	B	84	94	Right-handed alpha
Helix 58	AG4	B	111	119	Right-handed alpha
Helix 59	AG5	B	130	134	Right-handed 310
Helix 60	AG6	B	137	148	Right-handed alpha
Helix 61	AG7	B	149	152	Right-handed 310
Helix 62	AG8	B	156	162	Right-handed alpha
Helix 63	AG9	B	218	231	Right-handed alpha
Helix 64	AH1	B	261	294	Right-handed alpha
Helix 65	AH2	B	323	337	Right-handed alpha
Helix 66	AH3	B	347	350	Right-handed 310
Helix 67	AH4	B	351	356	Right-handed alpha
Helix 68	AH5	B	360	363	Right-handed 310
Helix 69	AH6	B	364	373	Right-handed alpha
Helix 70	AH7	B	384	408	Right-handed alpha

There are 16 sheets in PDB entry 6EWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	207	211	anti-parallel
Strand 3	A	190	194	anti-parallel
Strand 4	A	166	171	parallel
Strand 5	A	123	126	parallel
Strand 6	A	76	80	parallel
Strand 7	A	97	101	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	178	179	anti-parallel
Strand 3	A	308	309	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	250	251	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	315	319	anti-parallel
Strand 3	A	374	377	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	55	first strand
Strand 2	D	207	211	anti-parallel
Strand 3	D	190	194	anti-parallel
Strand 4	D	166	171	parallel
Strand 5	D	123	126	parallel
Strand 6	D	76	80	parallel
Strand 7	D	97	101	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	183	first strand
Strand 2	D	178	179	anti-parallel
Strand 3	D	308	309	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	250	251	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	300	first strand
Strand 2	D	315	319	anti-parallel
Strand 3	D	374	377	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	55	first strand
Strand 2	C	207	211	anti-parallel
Strand 3	C	190	194	anti-parallel
Strand 4	C	166	171	parallel
Strand 5	C	123	126	parallel
Strand 6	C	76	80	parallel
Strand 7	C	97	101	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	183	first strand
Strand 2	C	178	179	anti-parallel
Strand 3	C	308	309	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	235	first strand
Strand 2	C	250	251	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	300	first strand
Strand 2	C	315	319	anti-parallel
Strand 3	C	374	377	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	207	211	anti-parallel
Strand 3	B	190	194	anti-parallel
Strand 4	B	166	171	parallel
Strand 5	B	123	126	parallel
Strand 6	B	76	80	parallel
Strand 7	B	97	101	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	178	179	anti-parallel
Strand 3	B	308	309	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	235	first strand
Strand 2	B	250	251	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	315	319	anti-parallel
Strand 3	B	374	377	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EWJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EWJ