Analysis of interatomic Contacts of Structural Units in PDB entry:
6EXF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EXF entry

There are 4 chains in PDB entry 6EXF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 19	LEU 371
B	LEU 19	ASP 372
C	GLU 14	ASP 372
D	LEU 17	PHE 259

There are 59 helices in PDB entry 6EXF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	50	Right-handed alpha
Helix 2	AA2	A	54	60	Right-handed alpha
Helix 3	AA3	A	60	69	Right-handed alpha
Helix 4	AA4	A	70	82	Right-handed alpha
Helix 5	AA5	A	101	106	Right-handed alpha
Helix 6	AA6	A	111	115	Right-handed 310
Helix 7	AA7	A	116	133	Right-handed alpha
Helix 8	AA8	A	144	148	Right-handed 310
Helix 9	AA9	A	157	161	Right-handed 310
Helix 10	AB1	A	208	211	Right-handed 310
Helix 11	AB2	A	214	219	Right-handed alpha
Helix 12	AB3	A	220	222	Right-handed 310
Helix 13	AB4	A	260	265	Right-handed alpha
Helix 14	AB5	A	273	288	Right-handed alpha
Helix 15	AB6	A	289	291	Right-handed 310
Helix 16	AB7	A	348	350	Right-handed 310
Helix 17	AB8	B	31	50	Right-handed alpha
Helix 18	AB9	B	54	60	Right-handed alpha
Helix 19	AC1	B	60	69	Right-handed alpha
Helix 20	AC2	B	70	82	Right-handed alpha
Helix 21	AC3	B	101	106	Right-handed alpha
Helix 22	AC4	B	118	133	Right-handed alpha
Helix 23	AC5	B	144	148	Right-handed 310
Helix 24	AC6	B	208	211	Right-handed 310
Helix 25	AC7	B	214	219	Right-handed alpha
Helix 26	AC8	B	220	222	Right-handed 310
Helix 27	AC9	B	260	265	Right-handed alpha
Helix 28	AD1	B	273	288	Right-handed alpha
Helix 29	AD2	B	289	291	Right-handed 310
Helix 30	AD3	B	348	350	Right-handed 310
Helix 31	AD4	C	31	50	Right-handed alpha
Helix 32	AD5	C	54	60	Right-handed alpha
Helix 33	AD6	C	60	69	Right-handed alpha
Helix 34	AD7	C	70	82	Right-handed alpha
Helix 35	AD8	C	101	106	Right-handed alpha
Helix 36	AD9	C	111	115	Right-handed 310
Helix 37	AE1	C	120	133	Right-handed alpha
Helix 38	AE2	C	208	211	Right-handed 310
Helix 39	AE3	C	214	219	Right-handed alpha
Helix 40	AE4	C	220	222	Right-handed 310
Helix 41	AE5	C	260	265	Right-handed alpha
Helix 42	AE6	C	273	288	Right-handed alpha
Helix 43	AE7	C	289	291	Right-handed 310
Helix 44	AE8	C	348	350	Right-handed 310
Helix 45	AE9	D	31	50	Right-handed alpha
Helix 46	AF1	D	54	60	Right-handed alpha
Helix 47	AF2	D	60	69	Right-handed alpha
Helix 48	AF3	D	70	82	Right-handed alpha
Helix 49	AF4	D	101	106	Right-handed alpha
Helix 50	AF5	D	111	115	Right-handed 310
Helix 51	AF6	D	120	133	Right-handed alpha
Helix 52	AF7	D	157	161	Right-handed 310
Helix 53	AF8	D	208	211	Right-handed 310
Helix 54	AF9	D	214	219	Right-handed alpha
Helix 55	AG1	D	220	222	Right-handed 310
Helix 56	AG2	D	260	265	Right-handed alpha
Helix 57	AG3	D	273	288	Right-handed alpha
Helix 58	AG4	D	289	291	Right-handed 310
Helix 59	AG5	D	348	350	Right-handed 310

There are 28 sheets in PDB entry 6EXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	91	95	parallel
Strand 3	A	302	306	anti-parallel
Strand 4	A	188	195	anti-parallel
Strand 5	A	335	342	anti-parallel
Strand 6	A	151	154	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	91	95	parallel
Strand 3	A	302	306	anti-parallel
Strand 4	A	188	195	anti-parallel
Strand 5	A	335	342	anti-parallel
Strand 6	A	137	141	anti-parallel
Strand 7	A	356	360	parallel
Strand 8	A	352	353	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	206	first strand
Strand 2	A	310	314	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	244	245	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	250	first strand
Strand 2	A	255	257	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	324	first strand
Strand 2	A	327	330	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	364	first strand
Strand 2	A	367	368	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	91	95	parallel
Strand 3	B	302	306	anti-parallel
Strand 4	B	188	195	anti-parallel
Strand 5	B	335	342	anti-parallel
Strand 6	B	151	154	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	91	95	parallel
Strand 3	B	302	306	anti-parallel
Strand 4	B	188	195	anti-parallel
Strand 5	B	335	342	anti-parallel
Strand 6	B	137	141	anti-parallel
Strand 7	B	356	360	parallel
Strand 8	B	352	353	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	310	313	anti-parallel
Strand 3	B	204	206	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	226	first strand
Strand 2	B	244	245	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	250	first strand
Strand 2	B	255	257	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	364	first strand
Strand 2	B	367	368	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	91	95	parallel
Strand 3	C	302	306	anti-parallel
Strand 4	C	188	195	anti-parallel
Strand 5	C	335	342	anti-parallel
Strand 6	C	137	138	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	91	95	parallel
Strand 3	C	302	306	anti-parallel
Strand 4	C	188	195	anti-parallel
Strand 5	C	335	342	anti-parallel
Strand 6	C	151	154	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	141	first strand
Strand 2	C	356	360	parallel
Strand 3	C	352	353	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	176	first strand
Strand 2	C	310	314	anti-parallel
Strand 3	C	202	206	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	250	first strand
Strand 2	C	255	257	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	324	first strand
Strand 2	C	327	330	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	364	first strand
Strand 2	C	367	368	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	29	first strand
Strand 2	D	91	95	parallel
Strand 3	D	302	306	anti-parallel
Strand 4	D	188	195	anti-parallel
Strand 5	D	335	342	anti-parallel
Strand 6	D	137	138	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	29	first strand
Strand 2	D	91	95	parallel
Strand 3	D	302	306	anti-parallel
Strand 4	D	188	195	anti-parallel
Strand 5	D	335	342	anti-parallel
Strand 6	D	151	154	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	141	first strand
Strand 2	D	356	360	parallel
Strand 3	D	352	353	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	176	first strand
Strand 2	D	310	314	anti-parallel
Strand 3	D	202	206	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	226	first strand
Strand 2	D	244	245	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	250	first strand
Strand 2	D	255	257	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	323	first strand
Strand 2	D	328	330	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	362	364	first strand
Strand 2	D	367	368	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EXF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EXF