Analysis of interatomic Contacts of Structural Units in PDB entry:
6EXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EXM entry

There are 2 chains in PDB entry 6EXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ASN 237
B
 ASN 2ASN 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 6EXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 15Right-handed alpha
Helix 2
AA2
A
99 107Right-handed alpha
Helix 3
AA3
A
109 154Right-handed alpha
Helix 4
AA4
A
167 176Right-handed alpha
Helix 5
AA5
A
183 196Right-handed alpha
Helix 6
AA6
A
210 218Right-handed alpha
Helix 7
AA7
A
218 229Right-handed alpha
Helix 8
AA8
A
229 236Right-handed alpha
Helix 9
AA9
B
3 15Right-handed alpha
Helix 10
AB1
B
99 109Right-handed alpha
Helix 11
AB2
B
109 154Right-handed alpha
Helix 12
AB3
B
167 175Right-handed alpha
Helix 13
AB4
B
186 196Right-handed alpha
Helix 14
AB5
B
210 218Right-handed alpha
Helix 15
AB6
B
218 229Right-handed alpha
Helix 16
AB7
B
229 235Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6EXM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
91 98anti-parallel
Strand 3
A
37 43anti-parallel
Strand 4
A
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
84 87anti-parallel
Strand 3
A
45 51anti-parallel
Strand 4
A
57 64anti-parallel
Strand 5
A
179 180anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
161 164anti-parallel
Strand 3
A
205 208anti-parallel
Strand 4
A
199 202anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 23first strand
Strand 2
B
91 98anti-parallel
Strand 3
B
37 43anti-parallel
Strand 4
B
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
84 87anti-parallel
Strand 3
B
45 51anti-parallel
Strand 4
B
57 64anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 158first strand
Strand 2
B
161 164anti-parallel
Strand 3
B
205 208anti-parallel
Strand 4
B
199 202anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il