Analysis of interatomic Contacts of Structural Units in PDB entry:
6EXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EXP entry

There are 6 chains in PDB entry 6EXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 96
B
 MET 1HIS 100
C
 MET 1LYS 96
D
 MET 1HIS 100
E
 MET 1LYS 96
F
 MET 1LYS 93
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6EXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
33 41Right-handed alpha
Helix 3
AA3
B
2 16Right-handed alpha
Helix 4
AA4
B
34 41Right-handed alpha
Helix 5
AA5
C
2 16Right-handed alpha
Helix 6
AA6
C
34 41Right-handed alpha
Helix 7
AA7
D
2 16Right-handed alpha
Helix 8
AA8
D
34 41Right-handed alpha
Helix 9
AA9
E
2 16Right-handed alpha
Helix 10
AB1
E
34 41Right-handed alpha
Helix 11
AB2
F
2 16Right-handed alpha
Helix 12
AB3
F
33 41Right-handed alpha
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There are 2 sheets in PDB entry 6EXP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 51first strand
Strand 2
B
56 65anti-parallel
Strand 3
B
68 79anti-parallel
Strand 4
B
82 94anti-parallel
Strand 5
B
19 33anti-parallel
Strand 6
A
19 32anti-parallel
Strand 7
A
82 94anti-parallel
Strand 8
A
68 79anti-parallel
Strand 9
A
56 65anti-parallel
Strand 10
A
45 51anti-parallel
Strand 11
C
45 51parallel
Strand 12
C
56 65anti-parallel
Strand 13
C
68 79anti-parallel
Strand 14
C
82 94anti-parallel
Strand 15
C
19 33anti-parallel
Strand 16
D
19 33anti-parallel
Strand 17
D
82 94anti-parallel
Strand 18
D
68 78anti-parallel
Strand 19
D
56 65anti-parallel
Strand 20
D
45 51anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 51first strand
Strand 2
E
56 65anti-parallel
Strand 3
E
68 79anti-parallel
Strand 4
E
82 94anti-parallel
Strand 5
E
19 33anti-parallel
Strand 6
F
19 32anti-parallel
Strand 7
F
82 94anti-parallel
Strand 8
F
68 79anti-parallel
Strand 9
F
56 65anti-parallel
Strand 10
F
45 51anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il