Analysis of interatomic Contacts of Structural Units in PDB entry:
6EYD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EYD entry

There are 6 chains in PDB entry 6EYD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	LEU 221
B	MET 1	GLU 233
C	ASN 21	ARG 1139
D	VAL 4	ALA 1283
E	SER 24	GLY 106
F	ALA 149	ILE 365

There are103 helices in PDB entry 6EYD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	45	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	203	219	Right-handed alpha
Helix 4	AA4	B	30	45	Right-handed alpha
Helix 5	AA5	B	72	83	Right-handed alpha
Helix 6	AA6	B	108	110	Right-handed 310
Helix 7	AA7	B	203	227	Right-handed alpha
Helix 8	AA8	C	45	56	Right-handed alpha
Helix 9	AA9	C	58	68	Right-handed alpha
Helix 10	AB1	C	75	85	Right-handed alpha
Helix 11	AB2	C	109	117	Right-handed alpha
Helix 12	AB3	C	225	232	Right-handed alpha
Helix 13	AB4	C	235	243	Right-handed alpha
Helix 14	AB5	C	248	255	Right-handed alpha
Helix 15	AB6	C	260	273	Right-handed alpha
Helix 16	AB7	C	279	291	Right-handed alpha
Helix 17	AB8	C	300	312	Right-handed alpha
Helix 18	AB9	C	326	342	Right-handed alpha
Helix 19	AC1	C	371	398	Right-handed alpha
Helix 20	AC2	C	411	423	Right-handed alpha
Helix 21	AC3	C	435	444	Right-handed alpha
Helix 22	AC4	C	467	471	Right-handed 310
Helix 23	AC5	C	524	530	Right-handed alpha
Helix 24	AC6	C	579	584	Right-handed alpha
Helix 25	AC7	C	587	591	Right-handed 310
Helix 26	AC8	C	592	604	Right-handed alpha
Helix 27	AC9	C	620	630	Right-handed alpha
Helix 28	AD1	C	730	736	Right-handed alpha
Helix 29	AD2	C	911	917	Right-handed alpha
Helix 30	AD3	C	919	933	Right-handed alpha
Helix 31	AD4	C	944	948	Right-handed 310
Helix 32	AD5	C	974	981	Right-handed alpha
Helix 33	AD6	C	1027	1032	Right-handed alpha
Helix 34	AD7	C	1060	1071	Right-handed alpha
Helix 35	AD8	C	1072	1080	Right-handed alpha
Helix 36	AD9	C	1086	1100	Right-handed alpha
Helix 37	AE1	C	1109	1122	Right-handed alpha
Helix 38	AE2	D	16	24	Right-handed alpha
Helix 39	AE3	D	48	53	Right-handed alpha
Helix 40	AE4	D	84	90	Right-handed 310
Helix 41	AE5	D	104	109	Right-handed alpha
Helix 42	AE6	D	112	118	Right-handed alpha
Helix 43	AE7	D	121	130	Right-handed alpha
Helix 44	AE8	D	140	147	Right-handed alpha
Helix 45	AE9	D	147	185	Right-handed alpha
Helix 46	AF1	D	193	228	Right-handed alpha
Helix 47	AF2	D	238	247	Right-handed alpha
Helix 48	AF3	D	258	267	Right-handed alpha
Helix 49	AF4	D	269	284	Right-handed alpha
Helix 50	AF5	D	286	305	Right-handed alpha
Helix 51	AF6	D	308	311	Right-handed 310
Helix 52	AF7	D	339	361	Right-handed alpha
Helix 53	AF8	D	363	383	Right-handed alpha
Helix 54	AF9	D	402	406	Right-handed 310
Helix 55	AG1	D	445	452	Right-handed alpha
Helix 56	AG2	D	452	463	Right-handed alpha
Helix 57	AG3	D	468	479	Right-handed alpha
Helix 58	AG4	D	483	492	Right-handed alpha
Helix 59	AG5	D	505	507	Right-handed 310
Helix 60	AG6	D	528	533	Right-handed alpha
Helix 61	AG7	D	548	558	Right-handed alpha
Helix 62	AG8	D	579	590	Right-handed alpha
Helix 63	AG9	D	614	624	Right-handed alpha
Helix 64	AH1	D	643	651	Right-handed alpha
Helix 65	AH2	D	666	674	Right-handed alpha
Helix 66	AH3	D	688	703	Right-handed alpha
Helix 67	AH4	D	704	726	Right-handed alpha
Helix 68	AH5	D	739	762	Right-handed alpha
Helix 69	AH6	D	765	792	Right-handed alpha
Helix 70	AH7	D	796	804	Right-handed alpha
Helix 71	AH8	D	809	817	Right-handed alpha
Helix 72	AH9	D	844	880	Right-handed alpha
Helix 73	AI1	D	914	919	Right-handed alpha
Helix 74	AI2	D	944	955	Right-handed alpha
Helix 75	AI3	D	963	967	Right-handed 310
Helix 76	AI4	D	975	979	Right-handed alpha
Helix 77	AI5	D	993	1004	Right-handed alpha
Helix 78	AI6	D	1005	1008	Right-handed 310
Helix 79	AI7	D	1028	1037	Right-handed alpha
Helix 80	AI8	D	1118	1126	Right-handed alpha
Helix 81	AI9	D	1127	1147	Right-handed alpha
Helix 82	AJ1	D	1151	1163	Right-handed alpha
Helix 83	AJ2	D	1183	1193	Right-handed alpha
Helix 84	AJ3	D	1210	1217	Right-handed alpha
Helix 85	AJ4	D	1221	1228	Right-handed alpha
Helix 86	AJ5	D	1229	1241	Right-handed alpha
Helix 87	AJ6	D	1248	1255	Right-handed alpha
Helix 88	AJ7	D	1265	1270	Right-handed alpha
Helix 89	AJ8	D	1276	1283	Right-handed alpha
Helix 90	AJ9	E	30	34	Right-handed 310
Helix 91	AK1	E	36	42	Right-handed alpha
Helix 92	AK2	E	46	65	Right-handed alpha
Helix 93	AK3	E	87	99	Right-handed alpha
Helix 94	AK4	F	150	161	Right-handed alpha
Helix 95	AK5	F	165	176	Right-handed alpha
Helix 96	AK6	F	180	207	Right-handed alpha
Helix 97	AK7	F	212	237	Right-handed alpha
Helix 98	AK8	F	238	246	Right-handed alpha
Helix 99	AK9	F	254	272	Right-handed alpha
Helix 100	AL1	F	280	300	Right-handed alpha
Helix 101	AL2	F	307	328	Right-handed alpha
Helix 102	AL3	F	333	342	Right-handed alpha
Helix 103	AL4	F	346	356	Right-handed alpha

There are 38 sheets in PDB entry 6EYD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	11	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	179	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	142	anti-parallel
Strand 3	A	49	56	anti-parallel
Strand 4	A	161	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	116	117	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	167	168	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	231	232	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	19	26	anti-parallel
Strand 3	B	189	198	anti-parallel
Strand 4	B	171	181	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	143	anti-parallel
Strand 3	B	48	56	anti-parallel
Strand 4	B	162	163	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	117	118	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	963	964	parallel
Strand 3	C	617	618	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	94	99	anti-parallel
Strand 3	C	121	132	anti-parallel
Strand 4	C	140	149	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	428	430	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	370	first strand
Strand 2	C	168	172	anti-parallel
Strand 3	C	445	447	parallel
Strand 4	C	489	490	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	182	first strand
Strand 2	C	189	196	anti-parallel
Strand 3	C	203	205	anti-parallel
Strand 4	C	215	217	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	511	anti-parallel
Strand 3	C	514	522	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	511	anti-parallel
Strand 3	C	569	571	anti-parallel
Strand 4	C	532	533	parallel
Strand 5	C	549	553	anti-parallel
Strand 6	C	559	563	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	634	635	first strand
Strand 2	C	691	692	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	662	first strand
Strand 2	C	648	653	anti-parallel
Strand 3	C	639	644	anti-parallel
Strand 4	C	686	687	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	678	679	first strand
Strand 2	C	694	695	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	714	first strand
Strand 2	C	906	908	parallel
Strand 3	C	726	729	anti-parallel
Strand 4	C	883	890	parallel
Strand 5	C	875	877	anti-parallel
Strand 6	C	1015	1023	anti-parallel
Strand 7	C	708	714	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	740	751	first strand
Strand 2	C	856	868	anti-parallel
Strand 3	C	837	844	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	794	first strand
Strand 2	C	828	829	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	797	798	first strand
Strand 2	C	824	825	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1035	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	521	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1057	1059	first strand
Strand 2	D	420	422	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1127	1128	first strand
Strand 2	D	10	11	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	252	255	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	329	first strand
Strand 2	D	335	336	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	634	637	parallel
Strand 3	D	661	662	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	885	887	first strand
Strand 2	D	973	974	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	896	898	first strand
Strand 2	D	959	962	anti-parallel
Strand 3	D	923	924	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1044	1045	first strand
Strand 2	D	1116	1117	parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1076	1077	first strand
Strand 2	D	1065	1069	anti-parallel
Strand 3	D	1052	1056	anti-parallel
Strand 4	D	1104	1106	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1181	1182	first strand
Strand 2	D	1166	1167	anti-parallel
Strand 3	D	1205	1206	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1274	1275	first strand
Strand 2	E	101	102	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EYD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EYD