Analysis of interatomic Contacts of Structural Units in PDB entry:
6EZD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EZD entry

There are 4 chains in PDB entry 6EZD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ASN 275
B	THR 2	ASN 275
C	THR 2	ASN 275
D	THR 2	GLY 276

There are 38 helices in PDB entry 6EZD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	17	Right-handed alpha
Helix 2	AA2	A	28	57	Right-handed alpha
Helix 3	AA3	A	61	77	Right-handed alpha
Helix 4	AA4	A	90	96	Right-handed alpha
Helix 5	AA5	A	102	108	Right-handed 310
Helix 6	AA6	A	121	134	Right-handed alpha
Helix 7	AA7	A	151	156	Right-handed alpha
Helix 8	AA8	A	175	192	Right-handed alpha
Helix 9	AA9	A	230	234	Right-handed 310
Helix 10	AB1	A	246	254	Right-handed alpha
Helix 11	AB2	B	6	17	Right-handed alpha
Helix 12	AB3	B	28	57	Right-handed alpha
Helix 13	AB4	B	61	77	Right-handed alpha
Helix 14	AB5	B	90	96	Right-handed alpha
Helix 15	AB6	B	102	108	Right-handed 310
Helix 16	AB7	B	121	134	Right-handed alpha
Helix 17	AB8	B	151	156	Right-handed alpha
Helix 18	AB9	B	175	191	Right-handed alpha
Helix 19	AC1	B	230	234	Right-handed 310
Helix 20	AC2	B	246	255	Right-handed alpha
Helix 21	AC3	C	6	17	Right-handed alpha
Helix 22	AC4	C	28	57	Right-handed alpha
Helix 23	AC5	C	61	77	Right-handed alpha
Helix 24	AC6	C	90	96	Right-handed alpha
Helix 25	AC7	C	104	108	Right-handed 310
Helix 26	AC8	C	121	134	Right-handed alpha
Helix 27	AC9	C	175	191	Right-handed alpha
Helix 28	AD1	C	228	233	Right-handed alpha
Helix 29	AD2	C	246	255	Right-handed alpha
Helix 30	AD3	D	6	17	Right-handed alpha
Helix 31	AD4	D	28	57	Right-handed alpha
Helix 32	AD5	D	61	77	Right-handed alpha
Helix 33	AD6	D	90	96	Right-handed alpha
Helix 34	AD7	D	103	108	Right-handed 310
Helix 35	AD8	D	121	134	Right-handed alpha
Helix 36	AD9	D	175	191	Right-handed alpha
Helix 37	AE1	D	227	233	Right-handed alpha
Helix 38	AE2	D	246	255	Right-handed alpha

There are 14 sheets in PDB entry 6EZD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	140	149	parallel
Strand 3	A	161	170	anti-parallel
Strand 4	A	239	245	anti-parallel
Strand 5	A	218	224	anti-parallel
Strand 6	A	208	213	anti-parallel
Strand 7	A	197	201	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	115	117	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	272	273	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	25	26	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	140	149	parallel
Strand 3	B	161	170	anti-parallel
Strand 4	B	239	245	anti-parallel
Strand 5	B	217	224	anti-parallel
Strand 6	B	208	214	anti-parallel
Strand 7	B	197	201	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	115	117	anti-parallel
Strand 3	B	109	110	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	272	273	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	81	first strand
Strand 2	C	140	149	parallel
Strand 3	C	161	170	anti-parallel
Strand 4	C	239	245	anti-parallel
Strand 5	C	217	224	anti-parallel
Strand 6	C	208	214	anti-parallel
Strand 7	C	197	201	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	115	117	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	269	first strand
Strand 2	C	272	273	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	25	26	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	140	149	parallel
Strand 3	D	161	170	anti-parallel
Strand 4	D	239	245	anti-parallel
Strand 5	D	217	224	anti-parallel
Strand 6	D	208	214	anti-parallel
Strand 7	D	197	202	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	115	117	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	269	first strand
Strand 2	D	272	273	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EZD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EZD