Analysis of interatomic Contacts of Structural Units in PDB entry:
6F05

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F05 entry

There are 7 chains in PDB entry 6F05 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	PHE 213
B	VAL 2	ALA 215
C	VAL 2	PHE 213
D	VAL 2	PHE 213
E	VAL 2	PHE 213
F	VAL 2	PHE 213
G	LEU 3	TYR 77

There are120 helices in PDB entry 6F05. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	24	Right-handed alpha
Helix 2	AA2	A	37	40	Right-handed 310
Helix 3	AA3	A	41	46	Right-handed alpha
Helix 4	AA4	A	65	77	Right-handed alpha
Helix 5	AA5	A	88	105	Right-handed alpha
Helix 6	AA6	A	106	117	Right-handed alpha
Helix 7	AA7	A	129	151	Right-handed alpha
Helix 8	AA8	A	162	167	Right-handed alpha
Helix 9	AA9	A	168	177	Right-handed alpha
Helix 10	AB1	A	182	187	Right-handed alpha
Helix 11	AB2	A	188	199	Right-handed alpha
Helix 12	AB3	A	201	212	Right-handed alpha
Helix 13	AB4	B	10	24	Right-handed alpha
Helix 14	AB5	B	33	40	Right-handed 310
Helix 15	AB6	B	41	46	Right-handed alpha
Helix 16	AB7	B	65	77	Right-handed alpha
Helix 17	AB8	B	88	105	Right-handed alpha
Helix 18	AB9	B	106	117	Right-handed alpha
Helix 19	AC1	B	129	151	Right-handed alpha
Helix 20	AC2	B	162	168	Right-handed alpha
Helix 21	AC3	B	168	177	Right-handed alpha
Helix 22	AC4	B	181	187	Right-handed alpha
Helix 23	AC5	B	188	199	Right-handed alpha
Helix 24	AC6	B	201	212	Right-handed alpha
Helix 25	AC7	C	12	23	Right-handed alpha
Helix 26	AC8	C	33	40	Right-handed 310
Helix 27	AC9	C	41	46	Right-handed alpha
Helix 28	AD1	C	65	77	Right-handed alpha
Helix 29	AD2	C	88	105	Right-handed alpha
Helix 30	AD3	C	106	117	Right-handed alpha
Helix 31	AD4	C	129	151	Right-handed alpha
Helix 32	AD5	C	162	167	Right-handed alpha
Helix 33	AD6	C	168	177	Right-handed alpha
Helix 34	AD7	C	182	187	Right-handed alpha
Helix 35	AD8	C	188	199	Right-handed alpha
Helix 36	AD9	C	201	212	Right-handed alpha
Helix 37	AE1	D	10	23	Right-handed alpha
Helix 38	AE2	D	37	40	Right-handed 310
Helix 39	AE3	D	41	46	Right-handed alpha
Helix 40	AE4	D	65	77	Right-handed alpha
Helix 41	AE5	D	88	105	Right-handed alpha
Helix 42	AE6	D	106	115	Right-handed alpha
Helix 43	AE7	D	130	151	Right-handed alpha
Helix 44	AE8	D	162	167	Right-handed alpha
Helix 45	AE9	D	168	177	Right-handed alpha
Helix 46	AF1	D	182	187	Right-handed alpha
Helix 47	AF2	D	188	199	Right-handed alpha
Helix 48	AF3	D	201	212	Right-handed alpha
Helix 49	AF4	E	10	23	Right-handed alpha
Helix 50	AF5	E	33	40	Right-handed 310
Helix 51	AF6	E	41	46	Right-handed alpha
Helix 52	AF7	E	65	77	Right-handed alpha
Helix 53	AF8	E	88	105	Right-handed alpha
Helix 54	AF9	E	106	117	Right-handed alpha
Helix 55	AG1	E	130	151	Right-handed alpha
Helix 56	AG2	E	162	168	Right-handed alpha
Helix 57	AG3	E	168	177	Right-handed alpha
Helix 58	AG4	E	182	187	Right-handed alpha
Helix 59	AG5	E	188	200	Right-handed alpha
Helix 60	AG6	E	201	212	Right-handed alpha
Helix 61	AG7	F	10	23	Right-handed alpha
Helix 62	AG8	F	37	40	Right-handed 310
Helix 63	AG9	F	41	46	Right-handed alpha
Helix 64	AH1	F	65	77	Right-handed alpha
Helix 65	AH2	F	88	105	Right-handed alpha
Helix 66	AH3	F	106	117	Right-handed alpha
Helix 67	AH4	F	128	151	Right-handed alpha
Helix 68	AH5	F	162	167	Right-handed alpha
Helix 69	AH6	F	168	177	Right-handed alpha
Helix 70	AH7	F	182	187	Right-handed alpha
Helix 71	AH8	F	188	199	Right-handed alpha
Helix 72	AH9	F	201	212	Right-handed alpha
Helix 73	AI1	G	10	23	Right-handed alpha
Helix 74	AI2	G	37	40	Right-handed 310
Helix 75	AI3	G	41	46	Right-handed alpha
Helix 76	AI4	G	65	77	Right-handed alpha
Helix 77	AI5	G	88	105	Right-handed alpha
Helix 78	AI6	G	106	115	Right-handed alpha
Helix 79	AI7	G	129	151	Right-handed alpha
Helix 80	AI8	G	162	168	Right-handed alpha
Helix 81	AI9	G	168	177	Right-handed alpha
Helix 82	AJ1	G	182	187	Right-handed alpha
Helix 83	AJ2	G	188	199	Right-handed alpha
Helix 84	AJ3	G	201	212	Right-handed alpha
Helix 85	AJ4	H	10	23	Right-handed alpha
Helix 86	AJ5	H	33	40	Right-handed 310
Helix 87	AJ6	H	41	46	Right-handed alpha
Helix 88	AJ7	H	65	77	Right-handed alpha
Helix 89	AJ8	H	88	105	Right-handed alpha
Helix 90	AJ9	H	106	119	Right-handed alpha
Helix 91	AK1	H	132	151	Right-handed alpha
Helix 92	AK2	H	162	167	Right-handed alpha
Helix 93	AK3	H	168	177	Right-handed alpha
Helix 94	AK4	H	181	187	Right-handed alpha
Helix 95	AK5	H	188	199	Right-handed alpha
Helix 96	AK6	H	201	212	Right-handed alpha
Helix 97	AK7	I	10	24	Right-handed alpha
Helix 98	AK8	I	33	40	Right-handed 310
Helix 99	AK9	I	41	46	Right-handed alpha
Helix 100	AL1	I	65	77	Right-handed alpha
Helix 101	AL2	I	88	105	Right-handed alpha
Helix 102	AL3	I	106	119	Right-handed alpha
Helix 103	AL4	I	128	151	Right-handed alpha
Helix 104	AL5	I	162	167	Right-handed alpha
Helix 105	AL6	I	168	177	Right-handed alpha
Helix 106	AL7	I	181	187	Right-handed alpha
Helix 107	AL8	I	188	199	Right-handed alpha
Helix 108	AL9	I	201	212	Right-handed alpha
Helix 109	AM1	J	11	23	Right-handed alpha
Helix 110	AM2	J	37	40	Right-handed 310
Helix 111	AM3	J	41	46	Right-handed alpha
Helix 112	AM4	J	65	77	Right-handed alpha
Helix 113	AM5	J	88	105	Right-handed alpha
Helix 114	AM6	J	106	114	Right-handed alpha
Helix 115	AM7	J	134	151	Right-handed alpha
Helix 116	AM8	J	162	167	Right-handed alpha
Helix 117	AM9	J	168	177	Right-handed alpha
Helix 118	AN1	J	182	187	Right-handed alpha
Helix 119	AN2	J	188	199	Right-handed alpha
Helix 120	AN3	J	201	212	Right-handed alpha

There are 10 sheets in PDB entry 6F05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	3	6	parallel
Strand 3	A	55	58	anti-parallel
Strand 4	A	61	64	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	3	6	parallel
Strand 3	B	55	58	anti-parallel
Strand 4	B	61	64	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	3	6	parallel
Strand 3	C	55	58	anti-parallel
Strand 4	C	61	64	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	30	first strand
Strand 2	D	3	6	parallel
Strand 3	D	55	58	anti-parallel
Strand 4	D	61	64	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	30	first strand
Strand 2	E	3	6	parallel
Strand 3	E	55	58	anti-parallel
Strand 4	E	61	64	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	30	first strand
Strand 2	F	3	6	parallel
Strand 3	F	55	58	anti-parallel
Strand 4	F	61	64	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	30	first strand
Strand 2	G	4	6	parallel
Strand 3	G	55	58	anti-parallel
Strand 4	G	61	64	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	30	first strand
Strand 2	H	3	6	parallel
Strand 3	H	55	58	anti-parallel
Strand 4	H	61	64	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	30	first strand
Strand 2	I	3	6	parallel
Strand 3	I	55	58	anti-parallel
Strand 4	I	61	64	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	28	30	first strand
Strand 2	J	4	6	parallel
Strand 3	J	55	58	anti-parallel
Strand 4	J	61	64	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F05

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F05