Analysis of interatomic Contacts of Structural Units in PDB entry:
6F07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F07 entry

There are 3 chains in PDB entry 6F07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 55SER 608
B
 ASN 3SER 608
D
 THR 3GLU 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 6F07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 73Right-handed alpha
Helix 2
AA2
A
95 105Right-handed alpha
Helix 3
AA3
A
107 122Right-handed alpha
Helix 4
AA4
A
122 127Right-handed alpha
Helix 5
AA5
A
135 146Right-handed alpha
Helix 6
AA6
A
154 173Right-handed alpha
Helix 7
AA7
A
175 183Right-handed alpha
Helix 8
AA8
A
185 192Right-handed alpha
Helix 9
AA9
A
203 223Right-handed alpha
Helix 10
AB1
A
231 241Right-handed alpha
Helix 11
AB2
A
242 243Right-handed 310
Helix 12
AB3
A
244 248Right-handed 310
Helix 13
AB4
A
249 266Right-handed alpha
Helix 14
AB5
A
279 302Right-handed alpha
Helix 15
AB6
A
338 357Right-handed alpha
Helix 16
AB7
A
366 386Right-handed alpha
Helix 17
AB8
A
393 422Right-handed alpha
Helix 18
AB9
A
426 444Right-handed alpha
Helix 19
AC1
A
445 447Right-handed 310
Helix 20
AC2
A
451 455Right-handed 310
Helix 21
AC3
A
456 477Right-handed alpha
Helix 22
AC4
A
479 494Right-handed alpha
Helix 23
AC5
A
495 496Right-handed 310
Helix 24
AC6
A
497 499Right-handed 310
Helix 25
AC7
A
500 523Right-handed alpha
Helix 26
AC8
A
535 552Right-handed alpha
Helix 27
AC9
A
554 563Right-handed alpha
Helix 28
AD1
A
589 601Right-handed alpha
Helix 29
AD2
A
603 607Right-handed 310
Helix 30
AD3
B
14 20Right-handed alpha
Helix 31
AD4
B
32 37Right-handed alpha
Helix 32
AD5
B
38 44Right-handed alpha
Helix 33
AD6
B
57 72Right-handed alpha
Helix 34
AD7
B
74 79Right-handed alpha
Helix 35
AD8
B
95 105Right-handed alpha
Helix 36
AD9
B
107 122Right-handed alpha
Helix 37
AE1
B
122 127Right-handed alpha
Helix 38
AE2
B
133 146Right-handed alpha
Helix 39
AE3
B
153 173Right-handed alpha
Helix 40
AE4
B
175 183Right-handed alpha
Helix 41
AE5
B
185 192Right-handed alpha
Helix 42
AE6
B
199 202Right-handed 310
Helix 43
AE7
B
203 223Right-handed alpha
Helix 44
AE8
B
224 228Right-handed 310
Helix 45
AE9
B
230 241Right-handed alpha
Helix 46
AF1
B
244 249Right-handed alpha
Helix 47
AF2
B
249 266Right-handed alpha
Helix 48
AF3
B
279 302Right-handed alpha
Helix 49
AF4
B
341 357Right-handed alpha
Helix 50
AF5
B
366 386Right-handed alpha
Helix 51
AF6
B
393 422Right-handed alpha
Helix 52
AF7
B
426 444Right-handed alpha
Helix 53
AF8
B
451 455Right-handed 310
Helix 54
AF9
B
456 477Right-handed alpha
Helix 55
AG1
B
479 494Right-handed alpha
Helix 56
AG2
B
495 496Right-handed 310
Helix 57
AG3
B
497 499Right-handed 310
Helix 58
AG4
B
500 523Right-handed alpha
Helix 59
AG5
B
535 552Right-handed alpha
Helix 60
AG6
B
554 563Right-handed alpha
Helix 61
AG7
B
589 601Right-handed alpha
Helix 62
AG8
B
602 606Right-handed 310
Helix 63
AG9
D
19 24Right-handed alpha
Helix 64
AH1
D
26 34Right-handed alpha
Helix 65
AH2
D
83 97Right-handed alpha
Helix 66
AH3
D
107 112Right-handed alpha
Helix 67
AH4
D
117 124Right-handed alpha
Helix 68
AH5
D
127 142Right-handed alpha
Helix 69
AH6
D
143 159Right-handed alpha
Helix 70
AH7
D
177 187Right-handed alpha
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There are 2 sheets in PDB entry 6F07. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 528first strand
Strand 2
A
533 534anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 18first strand
Strand 2
D
6 9anti-parallel
Strand 3
D
76 78parallel
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