Analysis of interatomic Contacts of Structural Units in PDB entry:
6F0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F0B entry

There is 1 chain in PDB entry 6F0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13TRP 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 6F0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 20Right-handed 310
Helix 2
AA2
A
21 26Right-handed 310
Helix 3
AA3
A
45 55Right-handed alpha
Helix 4
AA4
A
71 76Right-handed alpha
Helix 5
AA5
A
82 86Right-handed 310
Helix 6
AA6
A
89 97Right-handed alpha
Helix 7
AA7
A
98 102Right-handed 310
Helix 8
AA8
A
103 109Right-handed alpha
Helix 9
AA9
A
110 126Right-handed alpha
Helix 10
AB1
A
134 138Right-handed alpha
Helix 11
AB2
A
138 152Right-handed alpha
Helix 12
AB3
A
157 170Right-handed alpha
Helix 13
AB4
A
174 195Right-handed alpha
Helix 14
AB5
A
196 199Right-handed 310
Helix 15
AB6
A
203 211Right-handed alpha
Helix 16
AB7
A
219 252Right-handed alpha
Helix 17
AB8
A
253 255Right-handed 310
Helix 18
AB9
A
256 262Right-handed alpha
Helix 19
AC1
A
265 277Right-handed alpha
Helix 20
AC2
A
308 313Right-handed alpha
Helix 21
AC3
A
346 365Right-handed alpha
Helix 22
AC4
A
373 377Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 6F0B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
39 43anti-parallel
Strand 3
A
304 307parallel
Strand 4
A
284 288anti-parallel
Strand 5
A
58 59anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
392 394anti-parallel
Strand 3
A
369 370anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 294first strand
Strand 2
A
297 299anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il