Analysis of interatomic Contacts of Structural Units in PDB entry:
6F1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F1J entry

There are 2 chains in PDB entry 6F1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 25ALA 325
B
 SER 24ALA 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6F1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 92Right-handed 310
Helix 2
AA2
A
110 113Right-handed 310
Helix 3
AA3
A
189 191Right-handed 310
Helix 4
AA4
A
293 296Right-handed 310
Helix 5
AA5
A
311 315Right-handed 310
Helix 6
AA6
B
85 92Right-handed 310
Helix 7
AA7
B
110 113Right-handed 310
Helix 8
AA8
B
189 191Right-handed 310
Helix 9
AA9
B
293 296Right-handed 310
Helix 10
AB1
B
311 315Right-handed 310
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There are 10 sheets in PDB entry 6F1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
318 324anti-parallel
Strand 3
A
298 303anti-parallel
Strand 4
A
277 281anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 58first strand
Strand 2
A
61 70anti-parallel
Strand 3
A
75 80anti-parallel
Strand 4
A
94 96anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 109first strand
Strand 2
A
114 120anti-parallel
Strand 3
A
126 131anti-parallel
Strand 4
A
144 147anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 165first strand
Strand 2
A
169 175anti-parallel
Strand 3
A
180 187anti-parallel
Strand 4
A
200 204anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
237 244anti-parallel
Strand 3
A
224 232anti-parallel
Strand 4
A
212 219anti-parallel
Strand 5
A
291 292parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
318 324anti-parallel
Strand 3
B
298 303anti-parallel
Strand 4
B
277 281anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 58first strand
Strand 2
B
61 70anti-parallel
Strand 3
B
75 80anti-parallel
Strand 4
B
94 96anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 109first strand
Strand 2
B
114 120anti-parallel
Strand 3
B
126 131anti-parallel
Strand 4
B
144 147anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 165first strand
Strand 2
B
169 175anti-parallel
Strand 3
B
180 187anti-parallel
Strand 4
B
200 204anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
237 244anti-parallel
Strand 3
B
224 232anti-parallel
Strand 4
B
212 219anti-parallel
Strand 5
B
291 292parallel
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