Analysis of interatomic Contacts of Structural Units in PDB entry:
6F1Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F1Y entry

There are 2 chains in PDB entry 6F1Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
f	SER 780	UNK 1137
j	SER 37	GLN 373

There are 21 helices in PDB entry 6F1Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	f	780	797	Right-handed alpha
Helix 2	AA2	f	800	822	Right-handed alpha
Helix 3	AA3	f	829	863	Right-handed alpha
Helix 4	AA4	f	870	891	Right-handed alpha
Helix 5	AA5	f	895	926	Right-handed alpha
Helix 6	AA6	f	973	1001	Right-handed alpha
Helix 7	AA7	f	1002	1006	Right-handed 310
Helix 8	AA8	f	1035	1053	Right-handed alpha
Helix 9	AA9	f	1076	1096	Right-handed alpha
Helix 10	AB1	f	1111	1137	Right-handed alpha
Helix 11	AB2	j	38	46	Right-handed alpha
Helix 12	AB3	j	66	75	Right-handed alpha
Helix 13	AB4	j	115	121	Right-handed alpha
Helix 14	AB5	j	141	164	Right-handed alpha
Helix 15	AB6	j	168	182	Right-handed alpha
Helix 16	AB7	j	236	244	Right-handed alpha
Helix 17	AB8	j	247	266	Right-handed alpha
Helix 18	AB9	j	279	289	Right-handed alpha
Helix 19	AC1	j	318	324	Right-handed alpha
Helix 20	AC2	j	335	340	Right-handed alpha
Helix 21	AC3	j	361	371	Right-handed alpha

There are 2 sheets in PDB entry 6F1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	89	93	first strand
Strand 2	j	102	106	anti-parallel
Strand 3	j	55	60	parallel
Strand 4	j	108	109	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	89	93	first strand
Strand 2	j	102	106	anti-parallel
Strand 3	j	55	60	parallel
Strand 4	j	131	135	parallel
Strand 5	j	227	230	parallel
Strand 6	j	269	270	parallel
Strand 7	j	309	310	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F1Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F1Y