Analysis of interatomic Contacts of Structural Units in PDB entry:
6F1Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F1Z entry

There are 4 chains in PDB entry 6F1Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
o
 LEU 182ILE 217
p
 LEU 182ARG 224
s
 GLU 3THR 95
t
 GLU 3THR 95
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6F1Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
o
183 192Right-handed alpha
Helix 2
AA2
o
195 210Right-handed alpha
Helix 3
AA3
p
187 193Right-handed alpha
Helix 4
AA4
p
195 211Right-handed alpha
Helix 5
AA5
s
4 11Right-handed alpha
Helix 6
AA6
s
35 61Right-handed alpha
Helix 7
AA7
t
4 13Right-handed alpha
Helix 8
AA8
t
35 61Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6F1Z.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
s
17 20first strand
Strand 2
s
87 92anti-parallel
Strand 3
s
77 82anti-parallel
Strand 4
s
66 73anti-parallel
Strand 5
t
66 73anti-parallel
Strand 6
t
77 80anti-parallel
Strand 7
t
89 92anti-parallel
Strand 8
t
17 19anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il