Analysis of interatomic Contacts of Structural Units in PDB entry:
6F23


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F23 entry

There are 2 chains in PDB entry 6F23 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2VAL 156
B
 ALA 3VAL 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6F23. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 57Right-handed alpha
Helix 2
2
A
108 110Right-handed 310
Helix 3
3
A
113 115Right-handed 310
Helix 4
4
A
118 128Right-handed 310
Helix 5
5
B
45 57Right-handed alpha
Helix 6
6
B
108 110Right-handed 310
Helix 7
7
B
113 115Right-handed 310
Helix 8
8
B
118 128Right-handed 310
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There are 4 sheets in PDB entry 6F23. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
4 12anti-parallel
Strand 3
A
80 88parallel
Strand 4
A
65 74anti-parallel
Strand 5
A
133 140parallel
Strand 6
A
144 152anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
101 107anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
4 12anti-parallel
Strand 3
B
80 88parallel
Strand 4
B
65 74anti-parallel
Strand 5
B
132 140parallel
Strand 6
B
144 153anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 23first strand
Strand 2
B
101 107anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il