Analysis of interatomic Contacts of Structural Units in PDB entry:
6F28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F28 entry

There are 2 chains in PDB entry 6F28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5PRO 258
B
 ARG 6CYS 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6F28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 32Right-handed 310
Helix 2
AA2
A
36 50Right-handed alpha
Helix 3
AA3
A
73 81Right-handed alpha
Helix 4
AA4
A
96 99Right-handed 310
Helix 5
AA5
A
124 130Right-handed alpha
Helix 6
AA6
A
142 151Right-handed alpha
Helix 7
AA7
A
153 164Right-handed alpha
Helix 8
AA8
A
173 184Right-handed alpha
Helix 9
AA9
A
192 202Right-handed alpha
Helix 10
AB1
A
226 241Right-handed alpha
Helix 11
AB2
A
242 252Right-handed alpha
Helix 12
AB3
B
29 32Right-handed 310
Helix 13
AB4
B
36 50Right-handed alpha
Helix 14
AB5
B
73 81Right-handed alpha
Helix 15
AB6
B
94 99Right-handed alpha
Helix 16
AB7
B
124 130Right-handed alpha
Helix 17
AB8
B
142 151Right-handed alpha
Helix 18
AB9
B
153 166Right-handed alpha
Helix 19
AC1
B
173 184Right-handed alpha
Helix 20
AC2
B
192 202Right-handed alpha
Helix 21
AC3
B
226 241Right-handed alpha
Helix 22
AC4
B
242 252Right-handed alpha
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There are 10 sheets in PDB entry 6F28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
8 12parallel
Strand 3
A
86 87parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
34 35anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
220 222anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
215 217anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
186 191parallel
Strand 3
A
112 117anti-parallel
Strand 4
A
205 208anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
8 12parallel
Strand 3
B
86 87parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
34 35anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 103first strand
Strand 2
B
220 222anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
215 217anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 138first strand
Strand 2
B
186 191parallel
Strand 3
B
112 117anti-parallel
Strand 4
B
205 208anti-parallel
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