Analysis of interatomic Contacts of Structural Units in PDB entry:
6F2B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F2B entry

There are 4 chains in PDB entry 6F2B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 34	SER 358
B	PRO 33	SER 358
C	PRO 33	SER 358
D	PRO 33	PHE 349

There are 56 helices in PDB entry 6F2B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	53	Right-handed alpha
Helix 2	AA2	A	54	56	Right-handed 310
Helix 3	AA3	A	63	75	Right-handed alpha
Helix 4	AA4	A	76	78	Right-handed 310
Helix 5	AA5	A	79	92	Right-handed alpha
Helix 6	AA6	A	121	124	Right-handed 310
Helix 7	AA7	A	125	139	Right-handed alpha
Helix 8	AA8	A	147	151	Right-handed 310
Helix 9	AA9	A	209	216	Right-handed alpha
Helix 10	AB1	A	217	225	Right-handed alpha
Helix 11	AB2	A	234	238	Right-handed 310
Helix 12	AB3	A	276	294	Right-handed alpha
Helix 13	AB4	A	338	346	Right-handed 310
Helix 14	AB5	A	354	358	Right-handed 310
Helix 15	AB6	B	42	53	Right-handed alpha
Helix 16	AB7	B	54	56	Right-handed 310
Helix 17	AB8	B	63	75	Right-handed alpha
Helix 18	AB9	B	76	78	Right-handed 310
Helix 19	AC1	B	79	92	Right-handed alpha
Helix 20	AC2	B	121	125	Right-handed 310
Helix 21	AC3	B	126	139	Right-handed alpha
Helix 22	AC4	B	147	151	Right-handed 310
Helix 23	AC5	B	209	216	Right-handed alpha
Helix 24	AC6	B	217	225	Right-handed alpha
Helix 25	AC7	B	234	238	Right-handed 310
Helix 26	AC8	B	276	294	Right-handed alpha
Helix 27	AC9	B	338	346	Right-handed 310
Helix 28	AD1	B	354	358	Right-handed 310
Helix 29	AD2	C	42	53	Right-handed alpha
Helix 30	AD3	C	54	56	Right-handed 310
Helix 31	AD4	C	63	75	Right-handed alpha
Helix 32	AD5	C	76	78	Right-handed 310
Helix 33	AD6	C	79	92	Right-handed alpha
Helix 34	AD7	C	121	124	Right-handed 310
Helix 35	AD8	C	125	139	Right-handed alpha
Helix 36	AD9	C	147	151	Right-handed 310
Helix 37	AE1	C	209	214	Right-handed alpha
Helix 38	AE2	C	217	225	Right-handed alpha
Helix 39	AE3	C	234	238	Right-handed 310
Helix 40	AE4	C	276	294	Right-handed alpha
Helix 41	AE5	C	338	346	Right-handed 310
Helix 42	AE6	C	354	358	Right-handed 310
Helix 43	AE7	D	42	53	Right-handed alpha
Helix 44	AE8	D	54	56	Right-handed 310
Helix 45	AE9	D	63	75	Right-handed alpha
Helix 46	AF1	D	76	78	Right-handed 310
Helix 47	AF2	D	79	92	Right-handed alpha
Helix 48	AF3	D	121	125	Right-handed 310
Helix 49	AF4	D	126	139	Right-handed alpha
Helix 50	AF5	D	147	151	Right-handed 310
Helix 51	AF6	D	209	216	Right-handed alpha
Helix 52	AF7	D	217	225	Right-handed alpha
Helix 53	AF8	D	234	238	Right-handed 310
Helix 54	AF9	D	276	294	Right-handed alpha
Helix 55	AG1	D	338	346	Right-handed 310
Helix 56	AG2	D	354	358	Right-handed 310

There are 20 sheets in PDB entry 6F2B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	98	102	parallel
Strand 3	A	304	308	anti-parallel
Strand 4	A	190	197	anti-parallel
Strand 5	A	329	336	anti-parallel
Strand 6	A	154	156	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	98	102	parallel
Strand 3	A	304	308	anti-parallel
Strand 4	A	190	197	anti-parallel
Strand 5	A	329	336	anti-parallel
Strand 6	A	140	144	anti-parallel
Strand 7	A	352	353	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	178	first strand
Strand 2	A	312	316	anti-parallel
Strand 3	A	203	208	anti-parallel
Strand 4	A	295	298	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	253	first strand
Strand 2	A	229	232	anti-parallel
Strand 3	A	272	274	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	258	first strand
Strand 2	A	263	265	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	98	102	parallel
Strand 3	B	304	308	anti-parallel
Strand 4	B	190	197	anti-parallel
Strand 5	B	329	336	anti-parallel
Strand 6	B	154	156	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	98	102	parallel
Strand 3	B	304	308	anti-parallel
Strand 4	B	190	197	anti-parallel
Strand 5	B	329	336	anti-parallel
Strand 6	B	140	144	anti-parallel
Strand 7	B	352	353	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	178	first strand
Strand 2	B	312	316	anti-parallel
Strand 3	B	204	208	anti-parallel
Strand 4	B	295	297	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	253	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	272	274	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	258	first strand
Strand 2	B	263	265	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	98	102	parallel
Strand 3	C	304	308	anti-parallel
Strand 4	C	190	197	anti-parallel
Strand 5	C	329	336	anti-parallel
Strand 6	C	154	156	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	98	102	parallel
Strand 3	C	304	308	anti-parallel
Strand 4	C	190	197	anti-parallel
Strand 5	C	329	336	anti-parallel
Strand 6	C	140	144	anti-parallel
Strand 7	C	352	353	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	178	first strand
Strand 2	C	312	316	anti-parallel
Strand 3	C	204	208	anti-parallel
Strand 4	C	295	297	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	253	first strand
Strand 2	C	229	232	anti-parallel
Strand 3	C	272	274	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	258	first strand
Strand 2	C	263	265	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	98	102	parallel
Strand 3	D	304	308	anti-parallel
Strand 4	D	190	197	anti-parallel
Strand 5	D	329	336	anti-parallel
Strand 6	D	154	156	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	98	102	parallel
Strand 3	D	304	308	anti-parallel
Strand 4	D	190	197	anti-parallel
Strand 5	D	329	336	anti-parallel
Strand 6	D	140	144	anti-parallel
Strand 7	D	352	353	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	178	first strand
Strand 2	D	312	316	anti-parallel
Strand 3	D	204	208	anti-parallel
Strand 4	D	295	297	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	253	first strand
Strand 2	D	229	232	anti-parallel
Strand 3	D	272	274	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	258	first strand
Strand 2	D	263	265	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F2B

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F2B