Analysis of interatomic Contacts of Structural Units in PDB entry:
6F2E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F2E entry

There are 4 chains in PDB entry 6F2E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 30	SER 358
B	GLU 30	SER 358
C	SER 31	SER 358
D	GLU 30	ARG 316

There are 61 helices in PDB entry 6F2E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	36	Right-handed 310
Helix 2	AA2	A	42	54	Right-handed alpha
Helix 3	AA3	A	63	75	Right-handed alpha
Helix 4	AA4	A	76	78	Right-handed 310
Helix 5	AA5	A	79	92	Right-handed alpha
Helix 6	AA6	A	121	124	Right-handed 310
Helix 7	AA7	A	125	139	Right-handed alpha
Helix 8	AA8	A	147	151	Right-handed 310
Helix 9	AA9	A	160	165	Right-handed 310
Helix 10	AB1	A	209	215	Right-handed alpha
Helix 11	AB2	A	217	225	Right-handed alpha
Helix 12	AB3	A	234	238	Right-handed 310
Helix 13	AB4	A	276	294	Right-handed alpha
Helix 14	AB5	A	338	346	Right-handed 310
Helix 15	AB6	A	354	358	Right-handed 310
Helix 16	AB7	B	34	36	Right-handed 310
Helix 17	AB8	B	42	53	Right-handed alpha
Helix 18	AB9	B	54	56	Right-handed 310
Helix 19	AC1	B	63	75	Right-handed alpha
Helix 20	AC2	B	76	78	Right-handed 310
Helix 21	AC3	B	79	92	Right-handed alpha
Helix 22	AC4	B	121	125	Right-handed 310
Helix 23	AC5	B	126	139	Right-handed alpha
Helix 24	AC6	B	147	151	Right-handed 310
Helix 25	AC7	B	160	165	Right-handed 310
Helix 26	AC8	B	209	216	Right-handed alpha
Helix 27	AC9	B	217	225	Right-handed alpha
Helix 28	AD1	B	234	238	Right-handed 310
Helix 29	AD2	B	276	294	Right-handed alpha
Helix 30	AD3	B	338	346	Right-handed 310
Helix 31	AD4	B	354	358	Right-handed 310
Helix 32	AD5	C	34	36	Right-handed 310
Helix 33	AD6	C	42	54	Right-handed alpha
Helix 34	AD7	C	63	75	Right-handed alpha
Helix 35	AD8	C	76	78	Right-handed 310
Helix 36	AD9	C	79	92	Right-handed alpha
Helix 37	AE1	C	121	124	Right-handed 310
Helix 38	AE2	C	125	139	Right-handed alpha
Helix 39	AE3	C	147	151	Right-handed 310
Helix 40	AE4	C	160	165	Right-handed 310
Helix 41	AE5	C	209	216	Right-handed alpha
Helix 42	AE6	C	217	225	Right-handed alpha
Helix 43	AE7	C	234	238	Right-handed 310
Helix 44	AE8	C	276	294	Right-handed alpha
Helix 45	AE9	C	338	346	Right-handed 310
Helix 46	AF1	C	354	358	Right-handed 310
Helix 47	AF2	D	34	36	Right-handed 310
Helix 48	AF3	D	42	53	Right-handed alpha
Helix 49	AF4	D	54	56	Right-handed 310
Helix 50	AF5	D	63	75	Right-handed alpha
Helix 51	AF6	D	76	78	Right-handed 310
Helix 52	AF7	D	79	92	Right-handed alpha
Helix 53	AF8	D	121	125	Right-handed 310
Helix 54	AF9	D	126	139	Right-handed alpha
Helix 55	AG1	D	147	151	Right-handed 310
Helix 56	AG2	D	209	216	Right-handed alpha
Helix 57	AG3	D	217	225	Right-handed alpha
Helix 58	AG4	D	234	238	Right-handed 310
Helix 59	AG5	D	276	294	Right-handed alpha
Helix 60	AG6	D	338	346	Right-handed 310
Helix 61	AG7	D	354	358	Right-handed 310

There are 20 sheets in PDB entry 6F2E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	98	102	parallel
Strand 3	A	304	308	anti-parallel
Strand 4	A	190	197	anti-parallel
Strand 5	A	329	336	anti-parallel
Strand 6	A	154	156	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	98	102	parallel
Strand 3	A	304	308	anti-parallel
Strand 4	A	190	197	anti-parallel
Strand 5	A	329	336	anti-parallel
Strand 6	A	140	144	anti-parallel
Strand 7	A	352	353	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	178	first strand
Strand 2	A	312	316	anti-parallel
Strand 3	A	203	208	anti-parallel
Strand 4	A	295	298	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	253	first strand
Strand 2	A	229	232	anti-parallel
Strand 3	A	272	274	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	259	first strand
Strand 2	A	262	265	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	98	102	parallel
Strand 3	B	304	308	anti-parallel
Strand 4	B	190	197	anti-parallel
Strand 5	B	329	336	anti-parallel
Strand 6	B	154	156	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	98	102	parallel
Strand 3	B	304	308	anti-parallel
Strand 4	B	190	197	anti-parallel
Strand 5	B	329	336	anti-parallel
Strand 6	B	140	144	anti-parallel
Strand 7	B	352	353	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	178	first strand
Strand 2	B	312	316	anti-parallel
Strand 3	B	204	208	anti-parallel
Strand 4	B	295	297	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	253	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	273	274	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	259	first strand
Strand 2	B	262	265	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	98	102	parallel
Strand 3	C	304	308	anti-parallel
Strand 4	C	190	197	anti-parallel
Strand 5	C	329	336	anti-parallel
Strand 6	C	154	156	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	98	102	parallel
Strand 3	C	304	308	anti-parallel
Strand 4	C	190	197	anti-parallel
Strand 5	C	329	336	anti-parallel
Strand 6	C	140	144	anti-parallel
Strand 7	C	352	353	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	178	first strand
Strand 2	C	312	316	anti-parallel
Strand 3	C	204	208	anti-parallel
Strand 4	C	295	297	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	253	first strand
Strand 2	C	229	232	anti-parallel
Strand 3	C	272	274	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	259	first strand
Strand 2	C	262	265	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	98	102	parallel
Strand 3	D	304	308	anti-parallel
Strand 4	D	190	197	anti-parallel
Strand 5	D	329	336	anti-parallel
Strand 6	D	154	156	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	98	102	parallel
Strand 3	D	304	308	anti-parallel
Strand 4	D	190	197	anti-parallel
Strand 5	D	329	336	anti-parallel
Strand 6	D	140	144	anti-parallel
Strand 7	D	352	353	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	178	first strand
Strand 2	D	312	316	anti-parallel
Strand 3	D	204	208	anti-parallel
Strand 4	D	295	297	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	253	first strand
Strand 2	D	229	232	anti-parallel
Strand 3	D	272	274	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	259	first strand
Strand 2	D	262	265	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F2E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F2E