Analysis of interatomic Contacts of Structural Units in PDB entry:
6F2F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F2F entry

There are 3 chains in PDB entry 6F2F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 166
B
 MET 1LYS 166
C
 MET 1LYS 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6F2F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
55 57Right-handed 310
Helix 3
AA3
A
58 62Right-handed 310
Helix 4
AA4
A
71 77Right-handed alpha
Helix 5
AA5
A
79 92Right-handed alpha
Helix 6
AA6
A
103 110Right-handed alpha
Helix 7
AA7
A
120 122Right-handed 310
Helix 8
AA8
A
123 130Right-handed alpha
Helix 9
AA9
A
150 152Right-handed 310
Helix 10
AB1
A
153 165Right-handed alpha
Helix 11
AB2
B
12 26Right-handed alpha
Helix 12
AB3
B
55 57Right-handed 310
Helix 13
AB4
B
58 62Right-handed 310
Helix 14
AB5
B
71 77Right-handed alpha
Helix 15
AB6
B
79 92Right-handed alpha
Helix 16
AB7
B
103 110Right-handed alpha
Helix 17
AB8
B
120 122Right-handed 310
Helix 18
AB9
B
123 130Right-handed alpha
Helix 19
AC1
B
150 152Right-handed 310
Helix 20
AC2
B
153 165Right-handed alpha
Helix 21
AC3
C
12 26Right-handed alpha
Helix 22
AC4
C
55 57Right-handed 310
Helix 23
AC5
C
58 62Right-handed 310
Helix 24
AC6
C
71 77Right-handed alpha
Helix 25
AC7
C
79 92Right-handed alpha
Helix 26
AC8
C
103 110Right-handed alpha
Helix 27
AC9
C
120 122Right-handed 310
Helix 28
AD1
C
123 130Right-handed alpha
Helix 29
AD2
C
150 152Right-handed 310
Helix 30
AD3
C
153 166Right-handed alpha
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There are 9 sheets in PDB entry 6F2F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
29 34parallel
Strand 3
A
2 6parallel
Strand 4
A
64 67parallel
Strand 5
A
96 99parallel
Strand 6
A
145 148parallel
Strand 7
A
140 142anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
47 50anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
133 134parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
29 34parallel
Strand 3
B
2 6parallel
Strand 4
B
64 67parallel
Strand 5
B
96 99parallel
Strand 6
B
145 148parallel
Strand 7
B
140 142anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
47 50anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
133 134parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 53first strand
Strand 2
C
29 34parallel
Strand 3
C
2 6parallel
Strand 4
C
64 67parallel
Strand 5
C
96 99parallel
Strand 6
C
145 148parallel
Strand 7
C
140 142anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 41first strand
Strand 2
C
47 50anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 117first strand
Strand 2
C
133 134parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il