Analysis of interatomic Contacts of Structural Units in PDB entry:
6F2W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F2W entry

There are 2 chains in PDB entry 6F2W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 433
B
 GLN 1HIS 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6F2W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 18Right-handed alpha
Helix 2
AA2
A
20 25Right-handed alpha
Helix 3
AA3
A
25 34Right-handed alpha
Helix 4
AA4
A
35 64Right-handed alpha
Helix 5
AA5
A
72 79Right-handed alpha
Helix 6
AA6
A
79 93Right-handed alpha
Helix 7
AA7
A
93 114Right-handed alpha
Helix 8
AA8
A
121 139Right-handed alpha
Helix 9
AA9
A
139 153Right-handed alpha
Helix 10
AB1
A
155 167Right-handed alpha
Helix 11
AB2
A
172 177Right-handed 310
Helix 12
AB3
A
185 198Right-handed alpha
Helix 13
AB4
A
203 205Right-handed 310
Helix 14
AB5
A
206 214Right-handed alpha
Helix 15
AB6
A
220 247Right-handed alpha
Helix 16
AB7
A
248 255Right-handed alpha
Helix 17
AB8
A
257 267Right-handed alpha
Helix 18
AB9
A
269 295Right-handed alpha
Helix 19
AC1
A
295 304Right-handed alpha
Helix 20
AC2
A
309 315Right-handed alpha
Helix 21
AC3
A
323 341Right-handed alpha
Helix 22
AC4
A
342 372Right-handed alpha
Helix 23
AC5
A
385 406Right-handed alpha
Helix 24
AC6
A
406 419Right-handed alpha
Helix 25
AC7
A
419 430Right-handed alpha
Helix 26
AC8
B
27 32Right-handed 310
Helix 27
AC9
B
62 65Right-handed 310
Helix 28
AD1
B
107 111Right-handed 310
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There are 4 sheets in PDB entry 6F2W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
70 73anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
118 123parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
34 39anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
118 123parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
113 114anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
58 60anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il