Analysis of interatomic Contacts of Structural Units in PDB entry:
6F30

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F30 entry

There are 2 chains in PDB entry 6F30 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 140	PHE 871
B	TRP 140	PRO 673

There are 63 helices in PDB entry 6F30. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	171	179	Right-handed alpha
Helix 2	AA2	A	182	192	Right-handed alpha
Helix 3	AA3	A	205	216	Right-handed alpha
Helix 4	AA4	A	218	223	Right-handed alpha
Helix 5	AA5	A	242	251	Right-handed 310
Helix 6	AA6	A	255	262	Right-handed alpha
Helix 7	AA7	A	278	282	Right-handed 310
Helix 8	AA8	A	295	308	Right-handed alpha
Helix 9	AA9	A	325	333	Right-handed alpha
Helix 10	AB1	A	336	360	Right-handed alpha
Helix 11	AB2	A	388	390	Right-handed 310
Helix 12	AB3	A	419	428	Right-handed alpha
Helix 13	AB4	A	442	444	Right-handed 310
Helix 14	AB5	A	445	449	Right-handed 310
Helix 15	AB6	A	489	493	Right-handed 310
Helix 16	AB7	A	516	525	Right-handed alpha
Helix 17	AB8	A	539	543	Right-handed 310
Helix 18	AB9	A	588	594	Right-handed 310
Helix 19	AC1	A	596	608	Right-handed alpha
Helix 20	AC2	A	672	676	Right-handed 310
Helix 21	AC3	A	680	685	Right-handed alpha
Helix 22	AC4	A	695	699	Right-handed 310
Helix 23	AC5	A	701	706	Right-handed alpha
Helix 24	AC6	A	710	712	Right-handed 310
Helix 25	AC7	A	719	731	Right-handed alpha
Helix 26	AC8	A	731	740	Right-handed alpha
Helix 27	AC9	A	761	765	Right-handed 310
Helix 28	AD1	A	793	797	Right-handed 310
Helix 29	AD2	A	823	826	Right-handed 310
Helix 30	AD3	A	827	835	Right-handed alpha
Helix 31	AD4	A	838	847	Right-handed alpha
Helix 32	AD5	A	857	866	Right-handed alpha
Helix 33	AD6	B	171	179	Right-handed alpha
Helix 34	AD7	B	182	192	Right-handed alpha
Helix 35	AD8	B	205	216	Right-handed alpha
Helix 36	AD9	B	218	223	Right-handed alpha
Helix 37	AE1	B	242	251	Right-handed 310
Helix 38	AE2	B	255	262	Right-handed alpha
Helix 39	AE3	B	278	282	Right-handed 310
Helix 40	AE4	B	295	308	Right-handed alpha
Helix 41	AE5	B	325	333	Right-handed alpha
Helix 42	AE6	B	336	360	Right-handed alpha
Helix 43	AE7	B	388	390	Right-handed 310
Helix 44	AE8	B	419	428	Right-handed alpha
Helix 45	AE9	B	442	444	Right-handed 310
Helix 46	AF1	B	445	449	Right-handed 310
Helix 47	AF2	B	489	493	Right-handed 310
Helix 48	AF3	B	516	525	Right-handed alpha
Helix 49	AF4	B	539	543	Right-handed 310
Helix 50	AF5	B	588	594	Right-handed 310
Helix 51	AF6	B	596	608	Right-handed alpha
Helix 52	AF7	B	672	676	Right-handed 310
Helix 53	AF8	B	680	685	Right-handed alpha
Helix 54	AF9	B	701	706	Right-handed alpha
Helix 55	AG1	B	710	712	Right-handed 310
Helix 56	AG2	B	719	731	Right-handed alpha
Helix 57	AG3	B	731	740	Right-handed alpha
Helix 58	AG4	B	761	765	Right-handed 310
Helix 59	AG5	B	793	797	Right-handed 310
Helix 60	AG6	B	823	826	Right-handed 310
Helix 61	AG7	B	827	835	Right-handed alpha
Helix 62	AG8	B	838	847	Right-handed alpha
Helix 63	AG9	B	857	866	Right-handed alpha

There are 18 sheets in PDB entry 6F30. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	287	first strand
Strand 2	A	267	270	parallel
Strand 3	A	317	322	parallel
Strand 4	A	162	167	parallel
Strand 5	A	367	371	parallel
Strand 6	A	496	499	anti-parallel
Strand 7	A	193	195	anti-parallel
Strand 8	A	507	509	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	512	513	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	231	first strand
Strand 2	A	236	238	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	379	first strand
Strand 2	A	480	482	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	386	first strand
Strand 2	A	468	470	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	399	first strand
Strand 2	A	405	408	anti-parallel
Strand 3	A	459	463	anti-parallel
Strand 4	A	436	440	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	614	615	first strand
Strand 2	A	848	849	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	626	first strand
Strand 2	A	631	635	anti-parallel
Strand 3	A	640	648	anti-parallel
Strand 4	A	743	750	anti-parallel
Strand 5	A	779	787	anti-parallel
Strand 6	A	801	809	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	688	692	first strand
Strand 2	A	714	718	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	270	first strand
Strand 2	B	317	322	parallel
Strand 3	B	162	167	parallel
Strand 4	B	367	371	parallel
Strand 5	B	496	499	anti-parallel
Strand 6	B	193	195	anti-parallel
Strand 7	B	507	509	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	512	513	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	231	first strand
Strand 2	B	236	238	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	379	first strand
Strand 2	B	480	482	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	386	first strand
Strand 2	B	468	470	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	399	first strand
Strand 2	B	405	408	anti-parallel
Strand 3	B	459	463	anti-parallel
Strand 4	B	436	440	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	614	615	first strand
Strand 2	B	848	849	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	622	626	first strand
Strand 2	B	631	635	anti-parallel
Strand 3	B	640	648	anti-parallel
Strand 4	B	743	750	anti-parallel
Strand 5	B	779	787	anti-parallel
Strand 6	B	801	809	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	692	first strand
Strand 2	B	714	718	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F30

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F30