Analysis of interatomic Contacts of Structural Units in PDB entry:
6F33

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F33 entry

There are 2 chains in PDB entry 6F33 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 140	PHE 871
B	TRP 140	GLN 677

There are 49 helices in PDB entry 6F33. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	171	178	Right-handed alpha
Helix 2	AA2	A	179	181	Right-handed 310
Helix 3	AA3	A	182	192	Right-handed alpha
Helix 4	AA4	A	205	216	Right-handed alpha
Helix 5	AA5	A	218	223	Right-handed alpha
Helix 6	AA6	A	242	247	Right-handed 310
Helix 7	AA7	A	255	262	Right-handed alpha
Helix 8	AA8	A	295	308	Right-handed alpha
Helix 9	AA9	A	325	332	Right-handed alpha
Helix 10	AB1	A	336	360	Right-handed alpha
Helix 11	AB2	A	388	390	Right-handed 310
Helix 12	AB3	A	419	428	Right-handed alpha
Helix 13	AB4	A	445	449	Right-handed 310
Helix 14	AB5	A	489	493	Right-handed 310
Helix 15	AB6	A	516	525	Right-handed alpha
Helix 16	AB7	A	588	594	Right-handed alpha
Helix 17	AB8	A	596	607	Right-handed alpha
Helix 18	AB9	A	680	685	Right-handed alpha
Helix 19	AC1	A	703	708	Right-handed 310
Helix 20	AC2	A	720	731	Right-handed alpha
Helix 21	AC3	A	731	741	Right-handed alpha
Helix 22	AC4	A	823	826	Right-handed 310
Helix 23	AC5	A	827	835	Right-handed alpha
Helix 24	AC6	A	838	847	Right-handed alpha
Helix 25	AC7	A	857	866	Right-handed alpha
Helix 26	AC8	B	171	178	Right-handed alpha
Helix 27	AC9	B	182	192	Right-handed alpha
Helix 28	AD1	B	205	216	Right-handed alpha
Helix 29	AD2	B	218	223	Right-handed alpha
Helix 30	AD3	B	242	247	Right-handed 310
Helix 31	AD4	B	255	263	Right-handed alpha
Helix 32	AD5	B	295	308	Right-handed alpha
Helix 33	AD6	B	325	332	Right-handed alpha
Helix 34	AD7	B	336	359	Right-handed alpha
Helix 35	AD8	B	388	390	Right-handed 310
Helix 36	AD9	B	419	426	Right-handed alpha
Helix 37	AE1	B	445	449	Right-handed 310
Helix 38	AE2	B	489	493	Right-handed 310
Helix 39	AE3	B	516	525	Right-handed alpha
Helix 40	AE4	B	596	607	Right-handed alpha
Helix 41	AE5	B	680	685	Right-handed alpha
Helix 42	AE6	B	701	706	Right-handed alpha
Helix 43	AE7	B	710	714	Right-handed 310
Helix 44	AE8	B	720	731	Right-handed alpha
Helix 45	AE9	B	731	740	Right-handed alpha
Helix 46	AF1	B	823	826	Right-handed 310
Helix 47	AF2	B	827	835	Right-handed alpha
Helix 48	AF3	B	838	847	Right-handed alpha
Helix 49	AF4	B	857	867	Right-handed alpha

There are 19 sheets in PDB entry 6F33. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	322	first strand
Strand 2	A	162	167	parallel
Strand 3	A	367	371	parallel
Strand 4	A	496	499	anti-parallel
Strand 5	A	193	195	anti-parallel
Strand 6	A	507	509	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	512	513	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	231	first strand
Strand 2	A	236	238	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	379	first strand
Strand 2	A	480	482	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	386	first strand
Strand 2	A	468	470	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	398	first strand
Strand 2	A	406	408	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	440	first strand
Strand 2	A	459	463	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	614	615	first strand
Strand 2	A	848	849	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	626	first strand
Strand 2	A	631	635	anti-parallel
Strand 3	A	640	648	anti-parallel
Strand 4	A	743	750	anti-parallel
Strand 5	A	779	787	anti-parallel
Strand 6	A	801	809	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	688	692	first strand
Strand 2	A	714	718	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	322	first strand
Strand 2	B	162	167	parallel
Strand 3	B	367	371	parallel
Strand 4	B	496	499	anti-parallel
Strand 5	B	193	195	anti-parallel
Strand 6	B	507	509	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	512	513	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	231	first strand
Strand 2	B	236	238	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	378	first strand
Strand 2	B	481	482	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	386	first strand
Strand 2	B	468	470	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	398	first strand
Strand 2	B	405	408	anti-parallel
Strand 3	B	459	463	anti-parallel
Strand 4	B	436	440	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	614	615	first strand
Strand 2	B	848	849	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	622	626	first strand
Strand 2	B	631	635	anti-parallel
Strand 3	B	640	648	anti-parallel
Strand 4	B	743	750	anti-parallel
Strand 5	B	779	787	anti-parallel
Strand 6	B	801	809	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	691	first strand
Strand 2	B	715	718	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F33

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F33