Analysis of interatomic Contacts of Structural Units in PDB entry:
6F35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F35 entry

There are 2 chains in PDB entry 6F35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11SER 417
B
 GLY 11SER 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6F35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 19Right-handed 310
Helix 2
AA2
A
24 39Right-handed alpha
Helix 3
AA3
A
56 70Right-handed alpha
Helix 4
AA4
A
80 96Right-handed alpha
Helix 5
AA5
A
100 102Right-handed 310
Helix 6
AA6
A
108 122Right-handed alpha
Helix 7
AA7
A
136 145Right-handed alpha
Helix 8
AA8
A
155 159Right-handed 310
Helix 9
AA9
A
163 171Right-handed alpha
Helix 10
AB1
A
192 205Right-handed alpha
Helix 11
AB2
A
229 234Right-handed alpha
Helix 12
AB3
A
235 239Right-handed 310
Helix 13
AB4
A
253 257Right-handed 310
Helix 14
AB5
A
264 279Right-handed alpha
Helix 15
AB6
A
283 296Right-handed alpha
Helix 16
AB7
A
299 320Right-handed alpha
Helix 17
AB8
A
348 351Right-handed 310
Helix 18
AB9
A
363 376Right-handed alpha
Helix 19
AC1
A
383 386Right-handed 310
Helix 20
AC2
A
398 415Right-handed alpha
Helix 21
AC3
B
15 19Right-handed 310
Helix 22
AC4
B
24 39Right-handed alpha
Helix 23
AC5
B
56 70Right-handed alpha
Helix 24
AC6
B
80 96Right-handed alpha
Helix 25
AC7
B
100 102Right-handed 310
Helix 26
AC8
B
108 122Right-handed alpha
Helix 27
AC9
B
136 145Right-handed alpha
Helix 28
AD1
B
155 159Right-handed 310
Helix 29
AD2
B
163 171Right-handed alpha
Helix 30
AD3
B
192 205Right-handed alpha
Helix 31
AD4
B
229 234Right-handed alpha
Helix 32
AD5
B
235 239Right-handed 310
Helix 33
AD6
B
253 257Right-handed 310
Helix 34
AD7
B
264 279Right-handed alpha
Helix 35
AD8
B
283 296Right-handed alpha
Helix 36
AD9
B
299 320Right-handed alpha
Helix 37
AE1
B
348 351Right-handed 310
Helix 38
AE2
B
363 376Right-handed alpha
Helix 39
AE3
B
383 386Right-handed 310
Helix 40
AE4
B
398 416Right-handed alpha
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There are 6 sheets in PDB entry 6F35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
377 378parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
259 262anti-parallel
Strand 3
A
241 246anti-parallel
Strand 4
A
210 214parallel
Strand 5
A
175 181parallel
Strand 6
A
127 132parallel
Strand 7
A
148 153parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 346first strand
Strand 2
A
390 394anti-parallel
Strand 3
A
380 381anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
377 378parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
259 262anti-parallel
Strand 3
B
241 246anti-parallel
Strand 4
B
210 214parallel
Strand 5
B
175 181parallel
Strand 6
B
127 132parallel
Strand 7
B
148 153parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 346first strand
Strand 2
B
390 394anti-parallel
Strand 3
B
380 381anti-parallel
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