Analysis of interatomic Contacts of Structural Units in PDB entry:
6F45


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F45 entry

There are 4 chains in PDB entry 6F45 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ALA 2LEU 249
A
 SER 570SER 637
B
 GLY 566SER 637
C
 GLY 569SER 637
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 6F45. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
7 17Right-handed alpha
Helix 2
AA2
D
20 28Right-handed alpha
Helix 3
AA3
D
38 41Right-handed 310
Helix 4
AA4
D
59 70Right-handed alpha
Helix 5
AA5
D
137 139Right-handed 310
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There are 8 sheets in PDB entry 6F45. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 36first strand
Strand 2
C
634 636anti-parallel
Strand 3
A
629 631parallel
Strand 4
B
621 623parallel
Strand 5
C
614 617parallel
Strand 6
A
606 609parallel
Strand 7
A
597 602anti-parallel
Strand 8
A
590 594anti-parallel
Strand 9
A
581 584anti-parallel
Strand 10
A
572 574anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 51first strand
Strand 2
D
75 79parallel
Strand 3
D
104 108parallel
Strand 4
D
141 145parallel
Strand 5
D
237 240parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 58first strand
Strand 2
D
83 85parallel
Strand 3
D
111 113parallel
Strand 4
D
148 150parallel
Strand 5
D
243 245parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 95first strand
Strand 2
D
133 135parallel
Strand 3
D
231 233parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
159 161first strand
Strand 2
D
164 166anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
199 200first strand
Strand 2
D
203 204anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
634 636first strand
Strand 2
B
629 631parallel
Strand 3
C
621 623parallel
Strand 4
A
614 617parallel
Strand 5
B
606 609parallel
Strand 6
B
597 602anti-parallel
Strand 7
B
589 594anti-parallel
Strand 8
B
581 586anti-parallel
Strand 9
B
572 574anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
634 636first strand
Strand 2
C
629 631parallel
Strand 3
A
621 623parallel
Strand 4
B
614 617parallel
Strand 5
C
606 609parallel
Strand 6
C
597 602anti-parallel
Strand 7
C
590 594anti-parallel
Strand 8
C
581 584anti-parallel
Strand 9
C
572 574anti-parallel
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