Analysis of interatomic Contacts of Structural Units in PDB entry:
6F49

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F49 entry

There are 4 chains in PDB entry 6F49 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 48	MET 266
B	MET 48	ALA 267
C	MET 48	LEU 270
D	MET 48	LEU 270

There are 44 helices in PDB entry 6F49. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	59	Right-handed alpha
Helix 2	AA2	A	60	63	Right-handed 310
Helix 3	AA3	A	81	85	Right-handed 310
Helix 4	AA4	A	125	127	Right-handed 310
Helix 5	AA5	A	133	137	Right-handed 310
Helix 6	AA6	A	148	155	Right-handed alpha
Helix 7	AA7	A	194	198	Right-handed 310
Helix 8	AA8	A	205	212	Right-handed alpha
Helix 9	AA9	A	228	230	Right-handed 310
Helix 10	AB1	A	231	236	Right-handed alpha
Helix 11	AB2	A	249	266	Right-handed alpha
Helix 12	AB3	B	49	59	Right-handed alpha
Helix 13	AB4	B	60	63	Right-handed 310
Helix 14	AB5	B	81	85	Right-handed 310
Helix 15	AB6	B	125	127	Right-handed 310
Helix 16	AB7	B	133	137	Right-handed 310
Helix 17	AB8	B	148	155	Right-handed alpha
Helix 18	AB9	B	194	198	Right-handed 310
Helix 19	AC1	B	205	212	Right-handed alpha
Helix 20	AC2	B	228	230	Right-handed 310
Helix 21	AC3	B	231	236	Right-handed alpha
Helix 22	AC4	B	249	267	Right-handed alpha
Helix 23	AC5	C	49	59	Right-handed alpha
Helix 24	AC6	C	60	63	Right-handed 310
Helix 25	AC7	C	81	85	Right-handed 310
Helix 26	AC8	C	125	127	Right-handed 310
Helix 27	AC9	C	133	137	Right-handed 310
Helix 28	AD1	C	148	155	Right-handed alpha
Helix 29	AD2	C	194	198	Right-handed 310
Helix 30	AD3	C	205	212	Right-handed alpha
Helix 31	AD4	C	228	230	Right-handed 310
Helix 32	AD5	C	231	236	Right-handed alpha
Helix 33	AD6	C	249	268	Right-handed alpha
Helix 34	AD7	D	49	59	Right-handed alpha
Helix 35	AD8	D	60	63	Right-handed 310
Helix 36	AD9	D	81	85	Right-handed 310
Helix 37	AE1	D	125	127	Right-handed 310
Helix 38	AE2	D	133	137	Right-handed 310
Helix 39	AE3	D	148	155	Right-handed alpha
Helix 40	AE4	D	194	198	Right-handed 310
Helix 41	AE5	D	205	212	Right-handed alpha
Helix 42	AE6	D	228	230	Right-handed 310
Helix 43	AE7	D	231	236	Right-handed alpha
Helix 44	AE8	D	249	268	Right-handed alpha

There are 8 sheets in PDB entry 6F49. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	180	190	anti-parallel
Strand 3	A	143	147	parallel
Strand 4	A	200	204	anti-parallel
Strand 5	A	109	117	parallel
Strand 6	A	90	104	anti-parallel
Strand 7	A	221	226	anti-parallel
Strand 8	A	66	70	anti-parallel
Strand 9	A	244	248	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	180	190	anti-parallel
Strand 3	A	161	166	anti-parallel
Strand 4	A	90	104	anti-parallel
Strand 5	A	221	226	anti-parallel
Strand 6	A	66	70	anti-parallel
Strand 7	A	244	248	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	130	first strand
Strand 2	B	180	190	anti-parallel
Strand 3	B	143	147	parallel
Strand 4	B	200	204	anti-parallel
Strand 5	B	109	117	parallel
Strand 6	B	90	104	anti-parallel
Strand 7	B	221	226	anti-parallel
Strand 8	B	66	70	anti-parallel
Strand 9	B	244	248	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	130	first strand
Strand 2	B	180	190	anti-parallel
Strand 3	B	161	166	anti-parallel
Strand 4	B	90	104	anti-parallel
Strand 5	B	221	226	anti-parallel
Strand 6	B	66	70	anti-parallel
Strand 7	B	244	248	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	180	190	anti-parallel
Strand 3	C	143	147	parallel
Strand 4	C	200	204	anti-parallel
Strand 5	C	109	117	parallel
Strand 6	C	90	104	anti-parallel
Strand 7	C	221	226	anti-parallel
Strand 8	C	66	70	anti-parallel
Strand 9	C	244	248	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	180	190	anti-parallel
Strand 3	C	161	166	anti-parallel
Strand 4	C	90	104	anti-parallel
Strand 5	C	221	226	anti-parallel
Strand 6	C	66	70	anti-parallel
Strand 7	C	244	248	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	130	first strand
Strand 2	D	180	190	anti-parallel
Strand 3	D	143	147	parallel
Strand 4	D	200	204	anti-parallel
Strand 5	D	109	117	parallel
Strand 6	D	90	104	anti-parallel
Strand 7	D	221	226	anti-parallel
Strand 8	D	66	70	anti-parallel
Strand 9	D	244	248	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	130	first strand
Strand 2	D	180	190	anti-parallel
Strand 3	D	161	166	anti-parallel
Strand 4	D	90	104	anti-parallel
Strand 5	D	221	226	anti-parallel
Strand 6	D	66	70	anti-parallel
Strand 7	D	244	248	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F49

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F49