Analysis of interatomic Contacts of Structural Units in PDB entry:
6F4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F4D entry

There is 1 chain in PDB entry 6F4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -5GLY 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6F4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-4 13Right-handed alpha
Helix 2
AA2
A
23 30Right-handed alpha
Helix 3
AA3
A
35 46Right-handed alpha
Helix 4
AA4
A
56 66Right-handed alpha
Helix 5
AA5
A
81 86Right-handed alpha
Helix 6
AA6
A
88 99Right-handed alpha
Helix 7
AA7
A
111 117Right-handed alpha
Helix 8
AA8
A
126 134Right-handed alpha
Helix 9
AA9
A
144 156Right-handed alpha
Helix 10
AB1
A
168 172Right-handed 310
Helix 11
AB2
A
174 185Right-handed alpha
Helix 12
AB3
A
197 203Right-handed alpha
Helix 13
AB4
A
209 216Right-handed alpha
Helix 14
AB5
A
217 219Right-handed 310
Helix 15
AB6
A
231 241Right-handed alpha
Helix 16
AB7
A
256 260Right-handed 310
Helix 17
AB8
A
261 272Right-handed alpha
Helix 18
AB9
A
279 296Right-handed alpha
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There are 3 sheets in PDB entry 6F4D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
14 19parallel
Strand 3
A
50 54parallel
Strand 4
A
71 73parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
104 107parallel
Strand 3
A
138 142parallel
Strand 4
A
158 161parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
189 192parallel
Strand 3
A
224 228parallel
Strand 4
A
245 248parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il