Analysis of interatomic Contacts of Structural Units in PDB entry:
6F4I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F4I entry

There are 6 chains in PDB entry 6F4I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3ILE 94
B
 LEU 4LYS 95
C
 MET 3LYS 85
D
 GLY -1SER 84
E
 LEU 4SER 88
F
 MET 3GLY 96
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6F4I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 32Right-handed alpha
Helix 2
AA2
A
33 35Right-handed 310
Helix 3
AA3
A
45 49Right-handed 310
Helix 4
AA4
A
58 70Right-handed alpha
Helix 5
AA5
A
87 94Right-handed alpha
Helix 6
AA6
B
19 32Right-handed alpha
Helix 7
AA7
B
33 35Right-handed 310
Helix 8
AA8
B
45 49Right-handed 310
Helix 9
AA9
B
58 70Right-handed alpha
Helix 10
AB1
B
86 95Right-handed alpha
Helix 11
AB2
C
19 32Right-handed alpha
Helix 12
AB3
C
33 35Right-handed 310
Helix 13
AB4
C
45 49Right-handed 310
Helix 14
AB5
C
58 70Right-handed alpha
Helix 15
AB6
D
0 7Right-handed alpha
Helix 16
AB7
D
19 32Right-handed alpha
Helix 17
AB8
D
33 35Right-handed 310
Helix 18
AB9
D
45 49Right-handed 310
Helix 19
AC1
D
58 70Right-handed alpha
Helix 20
AC2
E
19 32Right-handed alpha
Helix 21
AC3
E
33 35Right-handed 310
Helix 22
AC4
E
58 70Right-handed alpha
Helix 23
AC5
F
19 32Right-handed alpha
Helix 24
AC6
F
33 35Right-handed 310
Helix 25
AC7
F
58 70Right-handed alpha
Helix 26
AC8
F
88 96Right-handed alpha
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There are 12 sheets in PDB entry 6F4I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
52 56anti-parallel
Strand 3
A
8 12anti-parallel
Strand 4
A
80 83anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
77 78anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 41first strand
Strand 2
B
52 56anti-parallel
Strand 3
B
8 12anti-parallel
Strand 4
B
80 83anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
77 78anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 41first strand
Strand 2
C
52 56anti-parallel
Strand 3
C
8 12anti-parallel
Strand 4
C
80 83anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 74first strand
Strand 2
C
77 78anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 41first strand
Strand 2
D
52 56anti-parallel
Strand 3
D
8 12anti-parallel
Strand 4
D
80 82anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
73 74first strand
Strand 2
D
77 78anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
37 42first strand
Strand 2
E
52 56anti-parallel
Strand 3
E
8 12anti-parallel
Strand 4
E
80 83anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
73 74first strand
Strand 2
E
77 78anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
37 41first strand
Strand 2
F
52 56anti-parallel
Strand 3
F
8 12anti-parallel
Strand 4
F
80 83anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
73 74first strand
Strand 2
F
77 78anti-parallel
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