Analysis of interatomic Contacts of Structural Units in PDB entry:
6F4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F4J entry

There are 4 chains in PDB entry 6F4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 175
B
 MET 1ILE 174
C
 LEU 4LYS 95
D
 MET 3ILE 94
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6F4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 12Right-handed alpha
Helix 2
AA2
A
36 41Right-handed 310
Helix 3
AA3
A
82 86Right-handed 310
Helix 4
AA4
A
102 110Right-handed 310
Helix 5
AA5
A
123 128Right-handed 310
Helix 6
AA6
A
130 139Right-handed alpha
Helix 7
AA7
A
151 164Right-handed alpha
Helix 8
AA8
A
164 175Right-handed alpha
Helix 9
AA9
B
5 12Right-handed alpha
Helix 10
AB1
B
36 41Right-handed 310
Helix 11
AB2
B
82 86Right-handed 310
Helix 12
AB3
B
102 110Right-handed 310
Helix 13
AB4
B
123 128Right-handed 310
Helix 14
AB5
B
130 139Right-handed alpha
Helix 15
AB6
B
151 162Right-handed alpha
Helix 16
AB7
B
164 174Right-handed alpha
Helix 17
AB8
C
19 32Right-handed alpha
Helix 18
AB9
C
58 70Right-handed alpha
Helix 19
AC1
C
86 95Right-handed alpha
Helix 20
AC2
D
19 32Right-handed alpha
Helix 21
AC3
D
58 70Right-handed alpha
Helix 22
AC4
D
86 94Right-handed alpha
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There are 8 sheets in PDB entry 6F4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
22 25anti-parallel
Strand 3
A
46 48parallel
Strand 4
A
68 70parallel
Strand 5
A
92 94parallel
Strand 6
A
117 119parallel
Strand 7
A
144 145parallel
Strand 8
A
148 149anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
78 79parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 16first strand
Strand 2
B
22 25anti-parallel
Strand 3
B
46 48parallel
Strand 4
B
68 70parallel
Strand 5
B
92 94parallel
Strand 6
B
117 119parallel
Strand 7
B
144 145parallel
Strand 8
B
148 149anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
78 79parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 41first strand
Strand 2
C
52 56anti-parallel
Strand 3
C
8 12anti-parallel
Strand 4
C
80 83anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 74first strand
Strand 2
C
77 78anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 41first strand
Strand 2
D
52 56anti-parallel
Strand 3
D
8 12anti-parallel
Strand 4
D
80 83anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
73 74first strand
Strand 2
D
77 78anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il