Analysis of interatomic Contacts of Structural Units in PDB entry:
6F4M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F4M entry

There is 1 chain in PDB entry 6F4M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 182SER 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6F4M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
191 199Right-handed alpha
Helix 2
AA2
A
215 221Right-handed alpha
Helix 3
AA3
A
222 231Right-handed alpha
Helix 4
AA4
A
255 263Right-handed alpha
Helix 5
AA5
A
277 282Right-handed alpha
Helix 6
AA6
A
283 289Right-handed 310
Helix 7
AA7
A
292 298Right-handed 310
Helix 8
AA8
A
301 305Right-handed 310
Helix 9
AA9
A
342 349Right-handed 310
Helix 10
AB1
A
373 379Right-handed 310
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There are 4 sheets in PDB entry 6F4M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
206 209parallel
Strand 3
A
391 394anti-parallel
Strand 4
A
326 333anti-parallel
Strand 5
A
408 415anti-parallel
Strand 6
A
306 312anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 254first strand
Strand 2
A
234 240anti-parallel
Strand 3
A
270 273anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 322first strand
Strand 2
A
399 404anti-parallel
Strand 3
A
336 341anti-parallel
Strand 4
A
382 386anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
360 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il