Analysis of interatomic Contacts of Structural Units in PDB entry:
6F4N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F4N entry

There are 2 chains in PDB entry 6F4N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 174SER 416
B
 LEU 174SER 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6F4N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
191 199Right-handed alpha
Helix 2
AA2
A
215 221Right-handed alpha
Helix 3
AA3
A
222 231Right-handed alpha
Helix 4
AA4
A
244 246Right-handed 310
Helix 5
AA5
A
255 263Right-handed alpha
Helix 6
AA6
A
277 282Right-handed alpha
Helix 7
AA7
A
283 289Right-handed 310
Helix 8
AA8
A
292 298Right-handed 310
Helix 9
AA9
A
342 350Right-handed 310
Helix 10
AB1
A
373 379Right-handed 310
Helix 11
AB2
B
191 199Right-handed alpha
Helix 12
AB3
B
215 221Right-handed alpha
Helix 13
AB4
B
222 231Right-handed alpha
Helix 14
AB5
B
244 246Right-handed 310
Helix 15
AB6
B
255 263Right-handed alpha
Helix 16
AB7
B
277 282Right-handed alpha
Helix 17
AB8
B
282 287Right-handed alpha
Helix 18
AB9
B
292 298Right-handed 310
Helix 19
AC1
B
301 305Right-handed 310
Helix 20
AC2
B
342 350Right-handed 310
Helix 21
AC3
B
373 379Right-handed 310
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There are 6 sheets in PDB entry 6F4N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
206 209parallel
Strand 3
A
391 394anti-parallel
Strand 4
A
326 333anti-parallel
Strand 5
A
408 415anti-parallel
Strand 6
A
306 312anti-parallel
Strand 7
A
273 276anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 240first strand
Strand 2
A
248 254anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 321first strand
Strand 2
A
399 404anti-parallel
Strand 3
A
336 341anti-parallel
Strand 4
A
382 386anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 188first strand
Strand 2
B
206 209parallel
Strand 3
B
391 394anti-parallel
Strand 4
B
326 333anti-parallel
Strand 5
B
408 415anti-parallel
Strand 6
B
306 312anti-parallel
Strand 7
B
273 276anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 240first strand
Strand 2
B
248 254anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 321first strand
Strand 2
B
399 404anti-parallel
Strand 3
B
336 341anti-parallel
Strand 4
B
382 386anti-parallel
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