Analysis of interatomic Contacts of Structural Units in PDB entry:
6F4O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F4O entry

There is 1 chain in PDB entry 6F4O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 182SER 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 6F4O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
191 199Right-handed alpha
Helix 2
AA2
A
215 221Right-handed alpha
Helix 3
AA3
A
222 231Right-handed alpha
Helix 4
AA4
A
255 263Right-handed alpha
Helix 5
AA5
A
277 282Right-handed alpha
Helix 6
AA6
A
282 287Right-handed alpha
Helix 7
AA7
A
292 298Right-handed 310
Helix 8
AA8
A
301 305Right-handed 310
Helix 9
AA9
A
342 349Right-handed 310
Helix 10
AB1
A
354 358Right-handed 310
Helix 11
AB2
A
373 377Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 6F4O. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
206 209parallel
Strand 3
A
391 394anti-parallel
Strand 4
A
326 333anti-parallel
Strand 5
A
408 415anti-parallel
Strand 6
A
306 312anti-parallel
Strand 7
A
271 276anti-parallel
Strand 8
A
234 239anti-parallel
Strand 9
A
249 254anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 321first strand
Strand 2
A
399 404anti-parallel
Strand 3
A
336 341anti-parallel
Strand 4
A
382 386anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il