Analysis of interatomic Contacts of Structural Units in PDB entry:
6F56

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F56 entry

There are 4 chains in PDB entry 6F56 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 115	LEU 496
B	ARG 115	LEU 496
C	ARG 115	LEU 496
D	ARG 115	LEU 496

There are 56 helices in PDB entry 6F56. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	119	123	Right-handed 310
Helix 2	AA2	A	165	180	Right-handed alpha
Helix 3	AA3	A	193	202	Right-handed alpha
Helix 4	AA4	A	207	209	Right-handed 310
Helix 5	AA5	A	252	255	Right-handed 310
Helix 6	AA6	A	258	274	Right-handed alpha
Helix 7	AA7	A	302	309	Right-handed alpha
Helix 8	AA8	A	319	327	Right-handed alpha
Helix 9	AA9	A	342	344	Right-handed 310
Helix 10	AB1	A	345	358	Right-handed alpha
Helix 11	AB2	A	367	376	Right-handed alpha
Helix 12	AB3	A	430	445	Right-handed alpha
Helix 13	AB4	A	457	462	Right-handed 310
Helix 14	AB5	A	487	491	Right-handed 310
Helix 15	AB6	B	119	123	Right-handed 310
Helix 16	AB7	B	165	180	Right-handed alpha
Helix 17	AB8	B	193	202	Right-handed alpha
Helix 18	AB9	B	207	209	Right-handed 310
Helix 19	AC1	B	252	255	Right-handed 310
Helix 20	AC2	B	258	273	Right-handed alpha
Helix 21	AC3	B	302	309	Right-handed alpha
Helix 22	AC4	B	319	327	Right-handed alpha
Helix 23	AC5	B	342	344	Right-handed 310
Helix 24	AC6	B	345	358	Right-handed alpha
Helix 25	AC7	B	367	376	Right-handed alpha
Helix 26	AC8	B	430	445	Right-handed alpha
Helix 27	AC9	B	457	462	Right-handed 310
Helix 28	AD1	B	487	491	Right-handed 310
Helix 29	AD2	C	119	123	Right-handed 310
Helix 30	AD3	C	165	180	Right-handed alpha
Helix 31	AD4	C	193	202	Right-handed alpha
Helix 32	AD5	C	207	209	Right-handed 310
Helix 33	AD6	C	252	255	Right-handed 310
Helix 34	AD7	C	258	274	Right-handed alpha
Helix 35	AD8	C	302	309	Right-handed alpha
Helix 36	AD9	C	319	327	Right-handed alpha
Helix 37	AE1	C	342	344	Right-handed 310
Helix 38	AE2	C	345	358	Right-handed alpha
Helix 39	AE3	C	367	376	Right-handed alpha
Helix 40	AE4	C	430	445	Right-handed alpha
Helix 41	AE5	C	457	462	Right-handed 310
Helix 42	AE6	C	487	491	Right-handed 310
Helix 43	AE7	D	119	123	Right-handed 310
Helix 44	AE8	D	165	180	Right-handed alpha
Helix 45	AE9	D	193	202	Right-handed alpha
Helix 46	AF1	D	207	209	Right-handed 310
Helix 47	AF2	D	252	255	Right-handed 310
Helix 48	AF3	D	258	273	Right-handed alpha
Helix 49	AF4	D	302	309	Right-handed alpha
Helix 50	AF5	D	322	327	Right-handed alpha
Helix 51	AF6	D	342	344	Right-handed 310
Helix 52	AF7	D	345	358	Right-handed alpha
Helix 53	AF8	D	367	376	Right-handed alpha
Helix 54	AF9	D	430	445	Right-handed alpha
Helix 55	AG1	D	457	462	Right-handed 310
Helix 56	AG2	D	487	491	Right-handed 310

There are 14 sheets in PDB entry 6F56. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	160	first strand
Strand 2	A	211	216	anti-parallel
Strand 3	A	222	235	anti-parallel
Strand 4	A	238	250	anti-parallel
Strand 5	A	279	283	parallel
Strand 6	A	468	479	anti-parallel
Strand 7	A	292	300	anti-parallel
Strand 8	A	449	453	anti-parallel
Strand 9	A	418	421	parallel
Strand 10	A	394	402	anti-parallel
Strand 11	A	362	364	first strand

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	382	388	anti-parallel
Strand 3	A	394	402	anti-parallel
Strand 4	A	418	421	anti-parallel
Strand 5	A	449	453	parallel
Strand 6	A	292	300	anti-parallel
Strand 7	A	468	479	anti-parallel
Strand 8	A	279	283	anti-parallel
Strand 9	A	238	250	parallel
Strand 10	A	222	235	anti-parallel
Strand 11	A	425	426	first strand

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	190	first strand
Strand 2	A	405	407	anti-parallel
Strand 3	A	415	416	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	160	first strand
Strand 2	B	211	216	anti-parallel
Strand 3	B	222	235	anti-parallel
Strand 4	B	238	250	anti-parallel
Strand 5	B	279	283	parallel
Strand 6	B	468	479	anti-parallel
Strand 7	B	292	300	anti-parallel
Strand 8	B	449	453	anti-parallel
Strand 9	B	418	421	parallel
Strand 10	B	394	402	anti-parallel
Strand 11	B	362	364	first strand

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	382	388	anti-parallel
Strand 3	B	394	402	anti-parallel
Strand 4	B	418	421	anti-parallel
Strand 5	B	449	453	parallel
Strand 6	B	292	300	anti-parallel
Strand 7	B	468	479	anti-parallel
Strand 8	B	279	283	anti-parallel
Strand 9	B	238	250	parallel
Strand 10	B	222	235	anti-parallel
Strand 11	B	425	426	first strand

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	190	first strand
Strand 2	B	405	407	anti-parallel
Strand 3	B	415	416	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	160	first strand
Strand 2	C	211	216	anti-parallel
Strand 3	C	222	235	anti-parallel
Strand 4	C	238	250	anti-parallel
Strand 5	C	279	283	parallel
Strand 6	C	474	479	anti-parallel
Strand 7	C	292	294	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	160	first strand
Strand 2	C	211	216	anti-parallel
Strand 3	C	222	235	anti-parallel
Strand 4	C	362	364	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	190	first strand
Strand 2	C	405	407	anti-parallel
Strand 3	C	415	416	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	340	first strand
Strand 2	C	382	388	anti-parallel
Strand 3	C	394	402	anti-parallel
Strand 4	C	425	426	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	340	first strand
Strand 2	C	382	388	anti-parallel
Strand 3	C	394	402	anti-parallel
Strand 4	C	418	421	anti-parallel
Strand 5	C	449	453	parallel
Strand 6	C	296	300	anti-parallel
Strand 7	C	468	469	anti-parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	160	first strand
Strand 2	D	211	216	anti-parallel
Strand 3	D	222	235	anti-parallel
Strand 4	D	238	250	anti-parallel
Strand 5	D	279	283	parallel
Strand 6	D	468	479	anti-parallel
Strand 7	D	292	300	anti-parallel
Strand 8	D	449	453	anti-parallel
Strand 9	D	418	421	parallel
Strand 10	D	394	402	anti-parallel
Strand 11	D	382	388	anti-parallel
Strand 12	D	338	340	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	160	first strand
Strand 2	D	211	216	anti-parallel
Strand 3	D	222	235	anti-parallel
Strand 4	D	362	364	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	190	first strand
Strand 2	D	405	407	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F56

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F56